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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGCCACCAAGGGCCTGGCGGCCTCCGCCTCCGACCTGCTGGGCCAGGCGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAGgtgggtgggtgggtgtggactgtgggtggatgggtgggtgctacgcgtaggtatatgtggtgcgtgctgggtgcctgacaccgttacacatgctcggtcg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP04518
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15703910|gb|BI728215.1|BI728215
EST:     CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAG                         GGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC
genomic: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAGgtgggtgggt ... cgcaccacagGGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC
EST: gi|161808713|gb|FC094093.1|FC094093
EST:     CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAG                         GGCTGGCAGCTGACCACCTACCTGGATCCGGAGCTGCGTGTCACCCGCGGC
genomic: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAGgtgggtgggt ... cgcaccacagGGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC
EST: gi|9460414|gb|BE453219.1|BE453219
EST:     CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAG                         GGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC
genomic: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAGgtgggtgggt ... cgcaccacagGGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC
EST: gi|15694167|gb|BI718472.1|BI718472
EST:     CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAG                         GGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC
genomic: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAGgtgggtgggt ... cgcaccacagGGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC
EST: gi|6542450|gb|AV388234.1|AV388234
EST:     CTGGGCCA-GCAAACACACAG                         GGC-GGCAGCGGACAACCTA-CTGGGACCCGGAGCGGCGTGTCACCCGCGG
genomic: CTGGGCCAGGCCAACACGCAGgtgggtgggt ... cgcaccacagGGCTGGCAGCTGACCACCTACCT-GGACCCGGAGCTGCGTGTCACCCGCGG
EST: gi|7616247|gb|AW721687.1|AW721687
EST:     CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAG                         GGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC
genomic: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAGgtgggtgggt ... cgcaccacagGGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC
EST: gi|22067685|gb|BQ817747.1|BQ817747
EST:     CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAG                         GGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC
genomic: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAGgtgggtgggt ... cgcaccacagGGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC
EST: gi|22060738|gb|BQ813886.1|BQ813886
EST:     CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAG                         GGCTGGCAGCTGACCACCTACCTGGACCCGNGAGCTGCGTGTCACCCGCGG
genomic: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAGgtgggtgggt ... cgcaccacagGGCTGGCAGCTGACCACCTACCTGGACCCG-GAGCTGCGTGTCACCCGCGG
EST: gi|22060737|gb|BQ813885.1|BQ813885
EST:     CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAG                         GGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC
genomic: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAGgtgggtgggt ... cgcaccacagGGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC
EST: gi|22067968|gb|BQ817951.1|BQ817951
EST:     CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAG                         GGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC
genomic: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAGgtgggtgggt ... cgcaccacagGGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC
EST: gi|23358263|gb|BU646083.1|BU646083
EST:     CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAG                         GGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC
genomic: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAGgtgggtgggt ... cgcaccacagGGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC
EST: gi|22067686|gb|BQ817748.1|BQ817748
EST:     CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAG                         GGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC
genomic: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAGgtgggtgggt ... cgcaccacagGGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC
EST: gi|23363980|gb|BU651800.1|BU651800
EST:     CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAG                         GGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC
genomic: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAGgtgggtgggt ... cgcaccacagGGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC
EST: gi|16436438|gb|BM001658.1|BM001658
EST:     CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAG                         GGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC
genomic: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAGgtgggtgggt ... cgcaccacagGGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACGCCACCAAGGGCCTGGCGGCCTCCGCCTCCGACCTGCTGGGCCAGGCGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAGgtgggtgggtgggtgtggactgtgggtggatgggtgggtgctacgcgtaggtatatgtggtgcgtgctgggtgcctgacaccgttacacatgctcggtcg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacgcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacacat