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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAGgtgcgtgtctttgcagctgcttgcccaacgacgtgatggtgaaatcgaaccgtcgggccttcgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP04518
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16436439|gb|BM001659.1|BM001659
EST:     CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG                         ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG
genomic: CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAGgtgcgtgtct ... gccttcgcagACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG
EST: gi|15692659|gb|BI716964.1|BI716964
EST:     CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG                         ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG
genomic: CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAGgtgcgtgtct ... gccttcgcagACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG
EST: gi|10127120|gb|BE725824.1|BE725824
EST:     CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG                         ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG
genomic: CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAGgtgcgtgtct ... gccttcgcagACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG
EST: gi|10778893|gb|AV635573.1|AV635573
EST:     CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG                         ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG
genomic: CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAGgtgcgtgtct ... gccttcgcagACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG
EST: gi|23363546|gb|BU651366.1|BU651366
EST:     CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG                         ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG
genomic: CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAGgtgcgtgtct ... gccttcgcagACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG
EST: gi|22071548|gb|BQ820886.1|BQ820886
EST:     CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG                         ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAA
genomic: CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAGgtgcgtgtct ... gccttcgcagACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG
EST: gi|23367454|gb|BU655272.1|BU655272
EST:     CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG                         ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG
genomic: CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAGgtgcgtgtct ... gccttcgcagACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG
EST: gi|49460677|gb|BP088590.1|BP088590
EST:     CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG                         ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG
genomic: CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAGgtgcgtgtct ... gccttcgcagACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG
EST: gi|49464379|gb|BP092292.1|BP092292
EST:     CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG                         ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG
genomic: CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAGgtgcgtgtct ... gccttcgcagACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG
EST: gi|15691778|gb|BI716083.1|BI716083
EST:     CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG                         ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG
genomic: CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAGgtgcgtgtct ... gccttcgcagACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG
EST: gi|49461802|gb|BP089715.1|BP089715
EST:     CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG                         ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG
genomic: CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAGgtgcgtgtct ... gccttcgcagACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG
EST: gi|22067969|gb|BQ817952.1|BQ817952
EST:     CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG                         ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG
genomic: CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAGgtgcgtgtct ... gccttcgcagACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG
EST: gi|7616248|gb|AW721688.1|AW721688
EST:     CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG                         ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG
genomic: CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAGgtgcgtgtct ... gccttcgcagACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG
EST: gi|10779463|gb|AV636143.1|AV636143
EST:     CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG                         ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG
genomic: CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAGgtgcgtgtct ... gccttcgcagACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAGgtgcgtgtctttgcagctgcttgcccaacgacgtgatggtgaaatcgaaccgtcgggccttcgcag

- - - - - - - - - - - -  CATGGA