1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gctgcggtggacggcagcatggggcctgtgaggagacaggtggctggacgctgaatgcaactttgtctctggtgtgtcctatgacggaaccgcaccacagGGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGCGACGGCGGCGCCGTCTACATCTTCAAGAAGGCTGGTCCCAAGCCGCTGG
species | Chlamydomonas reinhardtii |
transcript | EDP04518 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAG GGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGCEST: gi|161808713|gb|FC094093.1|FC094093
genomic: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAGgtgggtgggt ... cgcaccacagGGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC
EST: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAG GGCTGGCAGCTGACCACCTACCTGGATCCGGAGCTGCGTGTCACCCGCGGCEST: gi|9460414|gb|BE453219.1|BE453219
genomic: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAGgtgggtgggt ... cgcaccacagGGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC
EST: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAG GGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGCEST: gi|15694167|gb|BI718472.1|BI718472
genomic: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAGgtgggtgggt ... cgcaccacagGGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC
EST: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAG GGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGCEST: gi|6542450|gb|AV388234.1|AV388234
genomic: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAGgtgggtgggt ... cgcaccacagGGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC
EST: CTGGGCCA-GCAAACACACAG GGC-GGCAGCGGACAACCTA-CTGGGACCCGGAGCGGCGTGTCACCCGCGGEST: gi|7616247|gb|AW721687.1|AW721687
genomic: CTGGGCCAGGCCAACACGCAGgtgggtgggt ... cgcaccacagGGCTGGCAGCTGACCACCTACCT-GGACCCGGAGCTGCGTGTCACCCGCGG
EST: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAG GGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGCEST: gi|22067685|gb|BQ817747.1|BQ817747
genomic: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAGgtgggtgggt ... cgcaccacagGGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC
EST: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAG GGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGCEST: gi|22060738|gb|BQ813886.1|BQ813886
genomic: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAGgtgggtgggt ... cgcaccacagGGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC
EST: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAG GGCTGGCAGCTGACCACCTACCTGGACCCGNGAGCTGCGTGTCACCCGCGGEST: gi|22060737|gb|BQ813885.1|BQ813885
genomic: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAGgtgggtgggt ... cgcaccacagGGCTGGCAGCTGACCACCTACCTGGACCCG-GAGCTGCGTGTCACCCGCGG
EST: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAG GGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGCEST: gi|22067968|gb|BQ817951.1|BQ817951
genomic: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAGgtgggtgggt ... cgcaccacagGGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC
EST: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAG GGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGCEST: gi|23358263|gb|BU646083.1|BU646083
genomic: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAGgtgggtgggt ... cgcaccacagGGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC
EST: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAG GGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGCEST: gi|22067686|gb|BQ817748.1|BQ817748
genomic: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAGgtgggtgggt ... cgcaccacagGGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC
EST: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAG GGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGCEST: gi|23363980|gb|BU651800.1|BU651800
genomic: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAGgtgggtgggt ... cgcaccacagGGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC
EST: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAG GGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGCEST: gi|16436438|gb|BM001658.1|BM001658
genomic: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAGgtgggtgggt ... cgcaccacagGGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC
EST: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAG GGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC
genomic: CGCCCGACCTGGAGCTGCCCCTGCAGAGCCTGGGCCAGGCCAACACGCAGgtgggtgggt ... cgcaccacagGGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctgcggtggacggcagcatggggcctgtgaggagacaggtggctggacgctgaatgcaactttgtctctggtgtgtcctatgacggaaccgcaccacagGGCTGGCAGCTGACCACCTACCTGGACCCGGAGCTGCGTGTCACCCGCGGCGACGGCGGCGCCGTCTACATCTTCAAGAAGGCTGGTCCCAAGCCGCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - -gcctgtg
- - - - - - - - - - - - - - - - -agacagg
- - - - - - - - - - - - - - - - - - - - - - - - - ctgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgtgt