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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAGgtgggggcggcacaggcgggcaggcaggcagggacaacggggccgcatgcggtgatgggcggggcttgcgcgtgggagatgggccgccggctctgctcct...

Basic information

species Chlamydomonas reinhardtii
transcript EDP04518
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161808713|gb|FC094093.1|FC094093
EST:     ACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAG                         CTGCCCCTGATCATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCG
genomic: ACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAGgtgggggcgg ... ccacgtgcagCTGCCCCTGATCATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCG
EST: gi|9460414|gb|BE453219.1|BE453219
EST:     AGACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAG                         CTGCCCCTGATCATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCG
genomic: AGACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAGgtgggggcgg ... ccacgtgcagCTGCCCCTGATCATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCG
EST: gi|15694167|gb|BI718472.1|BI718472
EST:     ACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAG                         CTGCCCCTGATCATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCG
genomic: ACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAGgtgggggcgg ... ccacgtgcagCTGCCCCTGATCATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCG
EST: gi|15692659|gb|BI716964.1|BI716964
EST:     ACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAG                         CTGCCCCTGATCATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCG
genomic: ACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAGgtgggggcgg ... ccacgtgcagCTGCCCCTGATCATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCG
EST: gi|10791897|gb|AV629263.1|AV629263
EST:     ACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAG                         CTGCCCCTGATCATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCG
genomic: ACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAGgtgggggcgg ... ccacgtgcagCTGCCCCTGATCATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCG
EST: gi|23363546|gb|BU651366.1|BU651366
EST:     ACCATCAACAGCACCGACCGNACCGTGGAGAACTNCCTGGAGCTGCAG                         CTGCCCCTGATCATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCG
genomic: ACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAGgtgggggcgg ... ccacgtgcagCTGCCCCTGATCATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCG
EST: gi|22060738|gb|BQ813886.1|BQ813886
EST:     GCACCGTGGAGAACTCCCTGGAGCTGCAG                         CTGCCCCTGATCATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCG
genomic: GCACCGTGGAGAACTCCCTGGAGCTGCAGgtgggggcgg ... ccacgtgcagCTGCCCCTGATCATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCG
EST: gi|22060737|gb|BQ813885.1|BQ813885
EST:     GCACCGTGGAGAACTCCCTGGAGCTGCAG                         CTGCCCCTGATCATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCG
genomic: GCACCGTGGAGAACTCCCTGGAGCTGCAGgtgggggcgg ... ccacgtgcagCTGCCCCTGATCATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCG
EST: gi|15691778|gb|BI716083.1|BI716083
EST:     ACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAG                         CTGCCCCTGATCATCACCTCGCTGTCCACTGTCAGCAACTACAACGTC
genomic: ACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAGgtgggggcgg ... ccacgtgcagCTGCCCCTGATCATCACCTCGCTGTCCACTGTCAGCAACTACAACGTC
EST: gi|22067686|gb|BQ817748.1|BQ817748
EST:     GCACCGTGGAGAACTCCCTGGAGCTGCAG                         CTGCCCCTGATCATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCG
genomic: GCACCGTGGAGAACTCCCTGGAGCTGCAGgtgggggcgg ... ccacgtgcagCTGCCCCTGATCATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCG
EST: gi|23363980|gb|BU651800.1|BU651800
EST:     ACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAG                         CTGCCCCTGATCATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCG
genomic: ACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAGgtgggggcgg ... ccacgtgcagCTGCCCCTGATCATCACCTCGCTGTCCACTGTCAGCAACTACAACGTCGCG
EST: gi|22067969|gb|BQ817952.1|BQ817952
EST:     ACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAG                         CTGCCCCTGATCATTACCT
genomic: ACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAGgtgggggcgg ... ccacgtgcagCTGCCCCTGATCATCACCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAGgtgggggcggcacaggcgggcaggcaggcagggacaacggggccgcatgcggtgatgggcggggcttgcgcgtgggagatgggccgccggctctgctcct

- - - - - - - - - - - - GTGGAG
- - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgcgt