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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAGgtgtgtgttgtggatgtgttcgagcactgtgggccatcctaccagcaggacacaactgacaactgcaacacccaacgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP04518
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16436439|gb|BM001659.1|BM001659
EST:     ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG                         GGCTCGGGTGCCGCCGCACCCCACAGCGCCCCTGCCGAGCAGGGCGCCGCT
genomic: ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAGgtgtgtgttg ... cccaacgcagGGCTCGGGTGCCGCCGCACCCCACAGCGCCCCTGCCGAGCAGGGCGCCGCT
EST: gi|15692659|gb|BI716964.1|BI716964
EST:     ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG                         GGCTCGGGTGCCGCCGCACCCCACAGCGCCCCTGCCGAGCAGGGCGCCGCT
genomic: ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAGgtgtgtgttg ... cccaacgcagGGCTCGGGTGCCGCCGCACCCCACAGCGCCCCTGCCGAGCAGGGCGCCGCT
EST: gi|10127120|gb|BE725824.1|BE725824
EST:     ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG                         GGCTCGGGTGCCGCCGCACCCCACAGCGCCCCTGCCGAGCAGGGCGCCGCT
genomic: ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAGgtgtgtgttg ... cccaacgcagGGCTCGGGTGCCGCCGCACCCCACAGCGCCCCTGCCGAGCAGGGCGCCGCT
EST: gi|10778893|gb|AV635573.1|AV635573
EST:     ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG                         GGCTCGGGTGCCGCCGCACCCCACAGCGCCCCTGCCGAGCAGGGCGCCGCT
genomic: ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAGgtgtgtgttg ... cccaacgcagGGCTCGGGTGCCGCCGCACCCCACAGCGCCCCTGCCGAGCAGGGCGCCGCT
EST: gi|23363546|gb|BU651366.1|BU651366
EST:     ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG                         GGCTCGGGTGCCGCCGCACCCCACAGCGCCCCTGCCGAGCAGGGCGCCGCT
genomic: ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAGgtgtgtgttg ... cccaacgcagGGCTCGGGTGCCGCCGCACCCCACAGCGCCCCTGCCGAGCAGGGCGCCGCT
EST: gi|22071548|gb|BQ820886.1|BQ820886
EST:     ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAA                         GGCTCGGGTGCCGCCGCACCCCACATCGCCCCTGCCGAGCAGGGCGCCGCT
genomic: ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAGgtgtgtgttg ... cccaacgcagGGCTCGGGTGCCGCCGCACCCCACAGCGCCCCTGCCGAGCAGGGCGCCGCT
EST: gi|23367454|gb|BU655272.1|BU655272
EST:     ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG                         GGCTCGGGTGCCGCCGCACCCCACAGCGCCCCTGCCGAGCAGGGCGCCGCT
genomic: ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAGgtgtgtgttg ... cccaacgcagGGCTCGGGTGCCGCCGCACCCCACAGCGCCCCTGCCGAGCAGGGCGCCGCT
EST: gi|49460677|gb|BP088590.1|BP088590
EST:     ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG                         GGCTCGGGTGCCGCCGCACCCCACAGCGCCCCTGCCGAGCAGGGCGCCGCT
genomic: ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAGgtgtgtgttg ... cccaacgcagGGCTCGGGTGCCGCCGCACCCCACAGCGCCCCTGCCGAGCAGGGCGCCGCT
EST: gi|49464379|gb|BP092292.1|BP092292
EST:     ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG                         GGCTCGGGTGCCGCCGCACCCCACAGCGCCCCTGCCGAGCAGGGCGCCGCT
genomic: ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAGgtgtgtgttg ... cccaacgcagGGCTCGGGTGCCGCCGCACCCCACAGCGCCCCTGCCGAGCAGGGCGCCGCT
EST: gi|15691778|gb|BI716083.1|BI716083
EST:     ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG                         GGCTCGGGTGCCGCCGCACCCCACAGCGCCCCTGCCGAGCAGGGCGCCGCT
genomic: ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAGgtgtgtgttg ... cccaacgcagGGCTCGGGTGCCGCCGCACCCCACAGCGCCCCTGCCGAGCAGGGCGCCGCT
EST: gi|49461802|gb|BP089715.1|BP089715
EST:     ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG                         GGCTCGGGTGCCGCCGCACCCCACAGCGCCCCTGCCGAGCAGGGCGCCGCT
genomic: ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAGgtgtgtgttg ... cccaacgcagGGCTCGGGTGCCGCCGCACCCCACAGCGCCCCTGCCGAGCAGGGCGCCGCT
EST: gi|22067969|gb|BQ817952.1|BQ817952
EST:     ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG                         GGCTCGGGTGCCGCCGCACCCCACAGCGCCCCTGCCGAGCAGGGCGCCGCT
genomic: ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAGgtgtgtgttg ... cccaacgcagGGCTCGGGTGCCGCCGCACCCCACAGCGCCCCTGCCGAGCAGGGCGCCGCT
EST: gi|7616248|gb|AW721688.1|AW721688
EST:     ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG                         GGCTCGGGTGCCGCCGCACCCCACAGCGCCCCTGCCGAGCAGGGCGCCGCT
genomic: ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAGgtgtgtgttg ... cccaacgcagGGCTCGGGTGCCGCCGCACCCCACAGCGCCCCTGCCGAGCAGGGCGCCGCT
EST: gi|10779463|gb|AV636143.1|AV636143
EST:     ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAG                         GGCTCGGGTGCCGCCGCACCCCACAGCGCCCCTGCCGAGCAGGGCGCCGCT
genomic: ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAGgtgtgtgttg ... cccaacgcagGGCTCGGGTGCCGCCGCACCCCACAGCGCCCCTGCCGAGCAGGGCGCCGCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACGCAACCGAGGCGTTTCTCCACTGCCGTGCGGAGCACTCAGgtgtgtgttgtggatgtgttcgagcactgtgggccatcctaccagcaggacacaactgacaactgcaacacccaacgcag

- - - - - - - - - - - - - - -  GGAGCA