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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTACTTATAGCGACCCAGTTGTCGACATTGCCGAGACCAACCTCGCACGCGTCAAGAATGCTAACTTCGCCTCGTTGCTGTGGTCGCGTTGGCAGCCGgtgagctccgttccagcgtgtcaacagagcgttgaccccgtttggtgatttcaccttagtctgtcgtctaacctaggctttgccacttcccacag

Basic information

species Chlamydomonas reinhardtii
transcript EDP04518
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16436439|gb|BM001659.1|BM001659
EST:     GCGTCAAGAATGCTAACTTCGCCTCGTTGCTGTGGTCGCGTTGGCAGCCG                         CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG
genomic: GCGTCAAGAATGCTAACTTCGCCTCGTTGCTGTGGTCGCGTTGGCAGCCGgtgagctccg ... cttcccacagCGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG
EST: gi|15692659|gb|BI716964.1|BI716964
EST:     GCGTCAAGAATGCTAACTTCGCCTCGTTGCTGTGGTCGCGTTGGCAGCCG                         CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG
genomic: GCGTCAAGAATGCTAACTTCGCCTCGTTGCTGTGGTCGCGTTGGCAGCCGgtgagctccg ... cttcccacagCGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG
EST: gi|10127120|gb|BE725824.1|BE725824
EST:     GCGTCAAGAATGCTAACTTCGCCTCGTTGCTGTGGTCGCGTTGGCAGCCG                         CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG
genomic: GCGTCAAGAATGCTAACTTCGCCTCGTTGCTGTGGTCGCGTTGGCAGCCGgtgagctccg ... cttcccacagCGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG
EST: gi|10778893|gb|AV635573.1|AV635573
EST:     GCGTCAAGAATGCTAACTTCGCCTCGTTGCTGTGGTCGCGTTGGCAGCCG                         CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG
genomic: GCGTCAAGAATGCTAACTTCGCCTCGTTGCTGTGGTCGCGTTGGCAGCCGgtgagctccg ... cttcccacagCGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG
EST: gi|23363546|gb|BU651366.1|BU651366
EST:     GCGTCAAGAATGCTAACTTCGCCTCGTTGCTGTGGTCGCGTTGGCAGCCG                         CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG
genomic: GCGTCAAGAATGCTAACTTCGCCTCGTTGCTGTGGTCGCGTTGGCAGCCGgtgagctccg ... cttcccacagCGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG
EST: gi|22071548|gb|BQ820886.1|BQ820886
EST:     GGTCGCGTTGGCAGCCG                         CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG
genomic: GGTCGCGTTGGCAGCCGgtgagctccg ... cttcccacagCGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG
EST: gi|23367454|gb|BU655272.1|BU655272
EST:     GCGTCAAGAATGCTAACTTCGCCTCGTTGCTGTGGTCGCGTTGGCAGCCG                         CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG
genomic: GCGTCAAGAATGCTAACTTCGCCTCGTTGCTGTGGTCGCGTTGGCAGCCGgtgagctccg ... cttcccacagCGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG
EST: gi|49460677|gb|BP088590.1|BP088590
EST:     GCGTCAAGAATGCTAACTTCGCCTCGTTGCTGTGGTCGCGTTGGCAGCCG                         CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG
genomic: GCGTCAAGAATGCTAACTTCGCCTCGTTGCTGTGGTCGCGTTGGCAGCCGgtgagctccg ... cttcccacagCGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG
EST: gi|49464379|gb|BP092292.1|BP092292
EST:     GCGTCAAGAATGCTAACTTCGCCTCGTTGCTGTGGTCGCGTTGGCAGCCG                         CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG
genomic: GCGTCAAGAATGCTAACTTCGCCTCGTTGCTGTGGTCGCGTTGGCAGCCGgtgagctccg ... cttcccacagCGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG
EST: gi|15691778|gb|BI716083.1|BI716083
EST:     GCGTCAAGAATGCTAACTTCGCCTCGTTGCTGTGGTCGCGTTGGCAGCCG                         CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG
genomic: GCGTCAAGAATGCTAACTTCGCCTCGTTGCTGTGGTCGCGTTGGCAGCCGgtgagctccg ... cttcccacagCGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG
EST: gi|49461802|gb|BP089715.1|BP089715
EST:     GCGTCAAGAATGCTAACTTCGCCTCGTTGCTGTGGTCGCGTTGGCAGCCG                         CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG
genomic: GCGTCAAGAATGCTAACTTCGCCTCGTTGCTGTGGTCGCGTTGGCAGCCGgtgagctccg ... cttcccacagCGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG
EST: gi|22067969|gb|BQ817952.1|BQ817952
EST:     GCGTCAAGAATGCTAACTTCGCCTCGTTGCTGTGGTCGCGTTGGCAGCCG                         CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG
genomic: GCGTCAAGAATGCTAACTTCGCCTCGTTGCTGTGGTCGCGTTGGCAGCCGgtgagctccg ... cttcccacagCGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG
EST: gi|7616248|gb|AW721688.1|AW721688
EST:     GCGTCAAGAATGCTAACTTCGCCTCGTTGCTGTGGTCGCGTTGGCAGCCG                         CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG
genomic: GCGTCAAGAATGCTAACTTCGCCTCGTTGCTGTGGTCGCGTTGGCAGCCGgtgagctccg ... cttcccacagCGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG
EST: gi|10779463|gb|AV636143.1|AV636143
EST:     GCGTCAAGAATGCTAACTTCGCCTCGTTGCTGTGGTCGCGTTGGCAGCCG                         CGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG
genomic: GCGTCAAGAATGCTAACTTCGCCTCGTTGCTGTGGTCGCGTTGGCAGCCGgtgagctccg ... cttcccacagCGCGTCGGCCTCGTCGCACCTTGTACATGGACCGCGTCAG