1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCTGCGCTGCTGGACGCCATCTGCGGCACCGAGCGCGGCCTTGTGGCCCGCTCGGAGGTACGGGCCGAGATCAACGAGCTGgtgcgagggagtggggcggggcgagggcggggcggggcggggcggggcggaggcgctgctttacagaactcgtgaccggctcataggctgcagggcgaca...
species | Chlamydomonas reinhardtii |
transcript | EDP04518 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTGGCCCGCTCGGAGGTACGGGCCGAGATCAACGAGCTG GTGAACCAGCTGGAGGTGCAGGGCGGGCAGGGCGCGGACGTGGCCAGCCTGEST: gi|15692659|gb|BI716964.1|BI716964
genomic: GTGGCCCGCTCGGAGGTACGGGCCGAGATCAACGAGCTGgtgcgaggga ... cccgtcgcagGTGAACCAGCTGGAGGTGCAGGGCGGGCAGGGCGCGGACGTGGCCAGCCTG
EST: AGCGCGGCCTTGTGGCCCGCTCGGAGGTACGGGCCGAGATCAACGAGCTG GTGAACCAGCTGGAGGTGCAGGGCGGGCAGGGCGCGGACGTGGCCAGCCTGEST: gi|10127120|gb|BE725824.1|BE725824
genomic: AGCGCGGCCTTGTGGCCCGCTCGGAGGTACGGGCCGAGATCAACGAGCTGgtgcgaggga ... cccgtcgcagGTGAACCAGCTGGAGGTGCAGGGCGGGCAGGGCGCGGACGTGGCCAGCCTG
EST: AGCGCGGCCTTGTGGCCCGCTCGGAGGTACGGGCCGAGATCAACGAGCTG GTGAACCAGCTGGAGGTGCAGGGCGGGCAGGGCGCGGACGTGGCCAGCCTGEST: gi|10791897|gb|AV629263.1|AV629263
genomic: AGCGCGGCCTTGTGGCCCGCTCGGAGGTACGGGCCGAGATCAACGAGCTGgtgcgaggga ... cccgtcgcagGTGAACCAGCTGGAGGTGCAGGGCGGGCAGGGCGCGGACGTGGCCAGCCTG
EST: AGCGCGGCCTTGTGGCCCGCTCGGAGGTACGGGCCGAGATCAACGAGCTG GTGAACCAGCTGGAGGTGCAGGGCGGGCAGGGCGCGGACGTGGCCAGCCTGEST: gi|10778893|gb|AV635573.1|AV635573
genomic: AGCGCGGCCTTGTGGCCCGCTCGGAGGTACGGGCCGAGATCAACGAGCTGgtgcgaggga ... cccgtcgcagGTGAACCAGCTGGAGGTGCAGGGCGGGCAGGGCGCGGACGTGGCCAGCCTG
EST: AGCGCGGCCTTGTGGCCCGCTCGGAGGTACGGGCCGAGATCAACGAGCTG GTGAACCAGCTGGAGGTGCAGGGCGGGCAGGGCGCGGACGTGGCCAGEST: gi|23363546|gb|BU651366.1|BU651366
genomic: AGCGCGGCCTTGTGGCCCGCTCGGAGGTACGGGCCGAGATCAACGAGCTGgtgcgaggga ... cccgtcgcagGTGAACCAGCTGGAGGTGCAGGGCGGGCAGGGCGCGGACGTGGCCAG
EST: AGCGCGGCCTTGTGGCCCGCTCGGAGGTACGGGCCGAGATCAACGAGCTG GTGAACCAGCTGGAGGTGCAGGGCGGGCAGGGCGCGGACGTGGCCAGCCTGEST: gi|23367454|gb|BU655272.1|BU655272
genomic: AGCGCGGCCTTGTGGCCCGCTCGGAGGTACGGGCCGAGATCAACGAGCTGgtgcgaggga ... cccgtcgcagGTGAACCAGCTGGAGGTGCAGGGCGGGCAGGGCGCGGACGTGGCCAGCCTG
EST: AGCGCGGCCTTGTGGCCCGCTCGGAGGTACGGGCCGAGATCAACGAGCTG GTGAACCAGCTGGAGGTGCAGGGCGGGCAGGGCGCGGACGTGGCCAGCCTGEST: gi|49464379|gb|BP092292.1|BP092292
genomic: AGCGCGGCCTTGTGGCCCGCTCGGAGGTACGGGCCGAGATCAACGAGCTGgtgcgaggga ... cccgtcgcagGTGAACCAGCTGGAGGTGCAGGGCGGGCAGGGCGCGGACGTGGCCAGCCTG
EST: AGCGCGGCCTTGTGGCCCGCTCGGAGGTACGGGCCGAGATCAACGAGCTG GTGAACCAGCTGGAGGTGCAGGGCGGGCAGGGCGCGGACGTGGCCAGCCTGEST: gi|15691778|gb|BI716083.1|BI716083
genomic: AGCGCGGCCTTGTGGCCCGCTCGGAGGTACGGGCCGAGATCAACGAGCTGgtgcgaggga ... cccgtcgcagGTGAACCAGCTGGAGGTGCAGGGCGGGCAGGGCGCGGACGTGGCCAGCCTG
EST: AGCGCGGCCTTGTGGCCCGCTCGGAGGTACGGGCCGAGATCAACGAGCTG GTGAACCAGCTGGAGGTGCAGGGCGGGCAGGGCGCGGACGTGGCCAGCCTGEST: gi|23363980|gb|BU651800.1|BU651800
genomic: AGCGCGGCCTTGTGGCCCGCTCGGAGGTACGGGCCGAGATCAACGAGCTGgtgcgaggga ... cccgtcgcagGTGAACCAGCTGGAGGTGCAGGGCGGGCAGGGCGCGGACGTGGCCAGCCTG
EST: AGCGCGGCCTTGTGGCCCGCTCGGAGGTACGGGCCGAGATCAACGAGCTG GTGAACCAGCTGGAGGTGCAGGGCGGGCAGGGCGCGGACGTGGCCAGCCTGEST: gi|22067969|gb|BQ817952.1|BQ817952
genomic: AGCGCGGCCTTGTGGCCCGCTCGGAGGTACGGGCCGAGATCAACGAGCTGgtgcgaggga ... cccgtcgcagGTGAACCAGCTGGAGGTGCAGGGCGGGCAGGGCGCGGACGTGGCCAGCCTG
EST: GCGCGGCCTTGTGGCCCGCTCGGAGGT-CTGGGCCGAGATCAACGAGCTG GTGAACCAGCTGGAGGTGCAGGGCGGGCAGGGCGCGGACGTGGCCAGCCTGEST: gi|7616248|gb|AW721688.1|AW721688
genomic: GCGCGGCCTTGTGGCCCGCTCGGAGGTAC-GGGCCGAGATCAACGAGCTGgtgcgaggga ... cccgtcgcagGTGAACCAGCTGGAGGTGCAGGGCGGGCAGGGCGCGGACGTGGCCAGCCTG
EST: AGCGCGGCCTTGTGGCCCGCTCGGAGGTACGGGCCGAGATCAACGAGCTG GTGAACCAGCTGGAGGTGCAGGGCGGGCAGGGCGCGGACGT
genomic: AGCGCGGCCTTGTGGCCCGCTCGGAGGTACGGGCCGAGATCAACGAGCTGgtgcgaggga ... cccgtcgcagGTGAACCAGCTGGAGGTGCAGGGCGGGCAGGGCGCGGACGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGCGCTGCTGGACGCCATCTGCGGCACCGAGCGCGGCCTTGTGGCCCGCTCGGAGGTACGGGCCGAGATCAACGAGCTGgtgcgagggagtggggcggggcgagggcggggcggggcggggcggggcggaggcgctgctttacagaactcgtgaccggctcataggctgcagggcgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tacagaa