1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gtgggtgctgccttggagccgcgataacgcatcggccggctcgcccagctcacgtcaccgtcatcgtatggaaggcgccccgctactcccccgcctgcagACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAG
species | Chlamydomonas reinhardtii |
transcript | EDP04518 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCATCAACAAGCTGCCGCTCAGCCCCGTCAAGATCGGCGCCGTCACCCAG ACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAGEST: gi|15694167|gb|BI718472.1|BI718472
genomic: CCATCAACAAGCTGCCGCTCAGCCCCGTCAAGATCGGCGCCGTCACCCAGgtgggcgcgc ... ccgcctgcagACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAG
EST: CCATCAACAAGCTGCCGCTCAGCCCCGTCAAGATCGGCGCCGTCACCCAG ACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAGEST: gi|15692659|gb|BI716964.1|BI716964
genomic: CCATCAACAAGCTGCCGCTCAGCCCCGTCAAGATCGGCGCCGTCACCCAGgtgggcgcgc ... ccgcctgcagACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAG
EST: CCATCAACAAGCTGCCGCTCAGCCCCGTCAAGATCGGCGCCGTCACCCAG ACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAGEST: gi|10791897|gb|AV629263.1|AV629263
genomic: CCATCAACAAGCTGCCGCTCAGCCCCGTCAAGATCGGCGCCGTCACCCAGgtgggcgcgc ... ccgcctgcagACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAG
EST: CCATCAACAAGCTGCCGCTCAGCCCCGTCAAGATCGGCGCCGTCACCCAG ACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAGEST: gi|23363546|gb|BU651366.1|BU651366
genomic: CCATCAACAAGCTGCCGCTCAGCCCCGTCAAGATCGGCGCCGTCACCCAGgtgggcgcgc ... ccgcctgcagACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAG
EST: CCATCAACAAGCTGNCGCTCAGCCCCGTCAAGATCGGCGCCGTCACCCAG ACCATCAACAGCACCGACCGNACCGTGGAGAACTNCCTGGAGCTGCAGEST: gi|23367454|gb|BU655272.1|BU655272
genomic: CCATCAACAAGCTGCCGCTCAGCCCCGTCAAGATCGGCGCCGTCACCCAGgtgggcgcgc ... ccgcctgcagACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAG
EST: CCATCAACAAGCTGCCGCTCAGCCCCGTCAAGATCGGCGCCGTCACCCAG ACCATCAACAGCACCGACCGCACCGTGGAGAAACTCCEST: gi|15691778|gb|BI716083.1|BI716083
genomic: CCATCAACAAGCTGCCGCTCAGCCCCGTCAAGATCGGCGCCGTCACCCAGgtgggcgcgc ... ccgcctgcagACCATCAACAGCACCGACCGCACCGTGGAGAA-CTCC
EST: CCATCAACAAGCTGCCGCTCAGCCCCGTCAAGATCGGCGCCGTCACCCAG ACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAGEST: gi|23363980|gb|BU651800.1|BU651800
genomic: CCATCAACAAGCTGCCGCTCAGCCCCGTCAAGATCGGCGCCGTCACCCAGgtgggcgcgc ... ccgcctgcagACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAG
EST: CCATCAACAAGCTGCCGCTCAGCCCCGTCAAGATCGGCGCCGTCACCCAG ACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAGEST: gi|22067969|gb|BQ817952.1|BQ817952
genomic: CCATCAACAAGCTGCCGCTCAGCCCCGTCAAGATCGGCGCCGTCACCCAGgtgggcgcgc ... ccgcctgcagACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAG
EST: CCATCAACAAGCTGCCGCTCAGCCCCGTCAAGATCGGCGCCGTCACCCAG ACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAG
genomic: CCATCAACAAGCTGCCGCTCAGCCCCGTCAAGATCGGCGCCGTCACCCAGgtgggcgcgc ... ccgcctgcagACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAG
cagctcacgtcaccgtcatcgtatggaaggcgccccgctactcccccgcctgcagACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAG
agctcac putative branch site (score: 3)
ccccgctactccccc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggtgctgccttggagccgcgataacgcatcggccggctcgcccagctcacgtcaccgtcatcgtatggaaggcgccccgctactcccccgcctgcagACCATCAACAGCACCGACCGCACCGTGGAGAACTCCCTGGAGCTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
gtgggtg
- - - - - - - - - - - - taacgca
- - - - - - - - - - - - - - - - - - - - - - - -gctcacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcgtatg