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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATCGACAGCGTGCGCAAGACCCACCCCGACCTGCCCATCATCCTCTACATCAGCGgtgcgtggtggcgggctgggatggaggatgatgggaggcagctttatacagggcgcaagggttgggatccacgttttgtctgcccataccacctcaccac...

Basic information

species Chlamydomonas reinhardtii
transcript EDO98596
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8287231|gb|BE024790.1|BE024790
EST:     CAGCGTGCGCAAGACCCACCCCGACCTGCCCATCATCCTCTACATCAGCG                         GCTCTGGCGGCCTGCTGGAGCGCATGGCCTCTTGCTCGCCCGACATCATCT
genomic: CAGCGTGCGCAAGACCCACCCCGACCTGCCCATCATCCTCTACATCAGCGgtgcgtggtg ... tacctcgcagGCTCTGGCGGCCTGCTGGAGCGCATGGCCTCTTGCTCGCCCGACATCATCT
EST: gi|161798329|gb|FC083512.1|FC083512
EST:     CAGCGTGCGCAAGACCCACCCCGACCTGCCCATCATCCTTTACATCAGCG                         GCTCTGGCGGCCTGCTGGAGCGCATGGCCTCTTGCTCGCCCGACATCATCT
genomic: CAGCGTGCGCAAGACCCACCCCGACCTGCCCATCATCCTCTACATCAGCGgtgcgtggtg ... tacctcgcagGCTCTGGCGGCCTGCTGGAGCGCATGGCCTCTTGCTCGCCCGACATCATCT
EST: gi|10768967|gb|AV619792.1|AV619792
EST:     CAGCGTGCGCAAGACCCACCCCGACCTGCCCATCATCCTCTACATCAGCG                         GCTCTGGCGGCCTGCTGGAGCGCATGGCCTCTTGCTCGCCCGACATCATCT
genomic: CAGCGTGCGCAAGACCCACCCCGACCTGCCCATCATCCTCTACATCAGCGgtgcgtggtg ... tacctcgcagGCTCTGGCGGCCTGCTGGAGCGCATGGCCTCTTGCTCGCCCGACATCATCT
EST: gi|6541232|gb|AV387016.1|AV387016
EST:     CAGCGTGCGCAAGACCCACCCCGACCTGCCCATCATCCTCTACATCAGCG                         GCTCTGGCGGCCTGCTGGAGCGCATGGCCTCTTGCTCGCCCGACATCATCT
genomic: CAGCGTGCGCAAGACCCACCCCGACCTGCCCATCATCCTCTACATCAGCGgtgcgtggtg ... tacctcgcagGCTCTGGCGGCCTGCTGGAGCGCATGGCCTCTTGCTCGCCCGACATCATCT
EST: gi|15370170|gb|BI529596.1|BI529596
EST:     CAGCGTGCGCAAGACCCACCCCGACCTGCCCATCATCCTCTACATCAGCG                         GCTCTGGCGGCCTGCTGGAGCGCATGGCCTCTTGCTCGCCCGACATCATCT
genomic: CAGCGTGCGCAAGACCCACCCCGACCTGCCCATCATCCTCTACATCAGCGgtgcgtggtg ... tacctcgcagGCTCTGGCGGCCTGCTGGAGCGCATGGCCTCTTGCTCGCCCGACATCATCT
EST: gi|15698489|gb|BI722794.1|BI722794
EST:     CAGCGTGCGCAAGACCCACCCCGACCTGCCCATCATCCTCTACATCAGCG                         GCTCTGGCGGCCTGCTGGAGCGCATGGCCTCTTGCTCGCCCGACATCATCT
genomic: CAGCGTGCGCAAGACCCACCCCGACCTGCCCATCATCCTCTACATCAGCGgtgcgtggtg ... tacctcgcagGCTCTGGCGGCCTGCTGGAGCGCATGGCCTCTTGCTCGCCCGACATCATCT
EST: gi|10772473|gb|AV623296.1|AV623296
EST:     CAGCGTGCGCAAGACCCACCCCGACCTGCCCATCATCCTCTACATCAGCG                         GCTCTGGCGGCCTGCTGGAGCGCATGGCCTCTTGCTCGCCCGACATCATCT
genomic: CAGCGTGCGCAAGACCCACCCCGACCTGCCCATCATCCTCTACATCAGCGgtgcgtggtg ... tacctcgcagGCTCTGGCGGCCTGCTGGAGCGCATGGCCTCTTGCTCGCCCGACATCATCT
EST: gi|15696926|gb|BI721231.1|BI721231
EST:     CAGCGTGCGCAAGACCCACCCCGACCTGCCCATCATCCTCTACATCAGCG                         GCTCTGGCGGCCTGCTGGAGCGCAT
genomic: CAGCGTGCGCAAGACCCACCCCGACCTGCCCATCATCCTCTACATCAGCGgtgcgtggtg ... tacctcgcagGCTCTGGCGGCCTGCTGGAGCGCAT
EST: gi|10779613|gb|AV636293.1|AV636293
EST:     CAGCGTGCGCAAGACCCACCCCGACCTGCCCATCATCCTCTACATCAGCG                         GCTCTGGCGGCCTGCTGGAGCGCATGGCCTCTTGCTCGCCCGACATCATCT
genomic: CAGCGTGCGCAAGACCCACCCCGACCTGCCCATCATCCTCTACATCAGCGgtgcgtggtg ... tacctcgcagGCTCTGGCGGCCTGCTGGAGCGCATGGCCTCTTGCTCGCCCGACATCATCT
EST: gi|16072373|gb|BI874369.1|BI874369
EST:     CAGCGTGCGCAAGACCCACCCCGACCTGCCCATCATCCTCTACATCAGCG                         GCTCTGGCGGCCTGCTGGAGCGCATGGCCTCTTGCTCGCCCGACATCATCT
genomic: CAGCGTGCGCAAGACCCACCCCGACCTGCCCATCATCCTCTACATCAGCGgtgcgtggtg ... tacctcgcagGCTCTGGCGGCCTGCTGGAGCGCATGGCCTCTTGCTCGCCCGACATCATCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGATCGACAGCGTGCGCAAGACCCACCCCGACCTGCCCATCATCCTCTACATCAGCGgtgcgtggtggcgggctgggatggaggatgatgggaggcagctttatacagggcgcaagggttgggatccacgttttgtctgcccataccacctcaccac

- - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgtct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catacca