1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgcgtgctgcgttgtgtgtgtgtgtactgatctgtcggctggggttgcggactgctgacagaatgacagagctgacaggatgcacattccggtagacccccgtacgcgttggcagcccgcatcccacacgcgaccccatgaccacaccttactctgtttccccgacaccgcagGGCAACATGGACCCCGGCGTCCTGTTCGGCTCCAAGGACTTCATCGAGAAGCGCGTCATGGACACCATCAAG
species | Chlamydomonas reinhardtii |
transcript | EDO98596 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGGACTTCACCGACGGCGTGAAGCGCTGCGGCACCAACTTCGCCTTCCAG GGCAACATGGACCCCGGCGTCCTGTTCGGCTCCAAGGACTTCATCGAGAAGEST: gi|10768967|gb|AV619792.1|AV619792
genomic: TGGACTTCACCGACGGCGTCAAGCGCTGCGGCACCAACTTCGCCTTCCAGgtgcgtgctg ... gacaccgcagGGCAACATGGACCCCGGCGTCCTGTTCGGCTCCAAGGACTTCATCGAGAAG
EST: TGGACTTCACCGACGGCGTCAAGCGCTGCGGCACCAACTTCGCCTTCCAG GGCAACATGGACCCCGGCGTCCTGTTCGGCTCCAAGGACTTCATCGAGAAGEST: gi|15370170|gb|BI529596.1|BI529596
genomic: TGGACTTCACCGACGGCGTCAAGCGCTGCGGCACCAACTTCGCCTTCCAGgtgcgtgctg ... gacaccgcagGGCAACATGGACCCCGGCGTCCTGTTCGGCTCCAAGGACTTCATCGAGAAG
EST: TGGACTTCACCGACGGCGTGAAGCGCTGCGGCACCAACTTCGCCTTCCAG GGCAACATGGACCCCGGCGTCCTGTTCGGCTCCAAGGACTTCATCGAGAAGEST: gi|15698489|gb|BI722794.1|BI722794
genomic: TGGACTTCACCGACGGCGTCAAGCGCTGCGGCACCAACTTCGCCTTCCAGgtgcgtgctg ... gacaccgcagGGCAACATGGACCCCGGCGTCCTGTTCGGCTCCAAGGACTTCATCGAGAAG
EST: TGGACTTCACCGACGGCGTGAAGCGCTGCGGCACCAACTTCGCCTTCCAG GGCAACATGGACCCCGGCGTCCTGTTCGGCTCCAAGGACTTCATCGAGAAGEST: gi|10772473|gb|AV623296.1|AV623296
genomic: TGGACTTCACCGACGGCGTCAAGCGCTGCGGCACCAACTTCGCCTTCCAGgtgcgtgctg ... gacaccgcagGGCAACATGGACCCCGGCGTCCTGTTCGGCTCCAAGGACTTCATCGAGAAG
EST: TGGACTTCACCGACGGCGTCAAGCGCTGCGGCACCAACTTCGCCTTCCAG GGCAACATGGACCCCGGCGTCCTGTTCGGCTCCAAGGACTTCATCGAGAAGEST: gi|10779613|gb|AV636293.1|AV636293
genomic: TGGACTTCACCGACGGCGTCAAGCGCTGCGGCACCAACTTCGCCTTCCAGgtgcgtgctg ... gacaccgcagGGCAACATGGACCCCGGCGTCCTGTTCGGCTCCAAGGACTTCATCGAGAAG
EST: TGGACTTCACCGACGGCGTCAAGCGCTGCGGCACCAACTTCGCCTTCCAG GGCAACATGGACCCCGGCGTCCTGTTCGGCTCCAAGGACTTCATCGAGAAGEST: gi|16072373|gb|BI874369.1|BI874369
genomic: TGGACTTCACCGACGGCGTCAAGCGCTGCGGCACCAACTTCGCCTTCCAGgtgcgtgctg ... gacaccgcagGGCAACATGGACCCCGGCGTCCTGTTCGGCTCCAAGGACTTCATCGAGAAG
EST: TGGACTTCACCGACGGCGTCAAGCGCTGCGGCACCAACTTCGCCTTCCAG GGCAACATGGACCCCGGCGTCCTGTTCGGCTCCAAGGACTTCATCGAGAAG
genomic: TGGACTTCACCGACGGCGTCAAGCGCTGCGGCACCAACTTCGCCTTCCAGgtgcgtgctg ... gacaccgcagGGCAACATGGACCCCGGCGTCCTGTTCGGCTCCAAGGACTTCATCGAGAAG
gcatcccacacgcgaccccatgaccacaccttactctgtttccccgacaccgcagGGCAACATGGACCCCGGCGTCCTGTTCGGCTCCAAGGACTTCATCGAGAAGCGCGTCATGGACACCATCAAG
accttac putative branch site (score: 3)
tttccccg putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgtgctgcgttgtgtgtgtgtgtactgatctgtcggctggggttgcggactgctgacagaatgacagagctgacaggatgcacattccggtagacccccgtacgcgttggcagcccgcatcccacacgcgaccccatgaccacaccttactctgtttccccgacaccgcagGGCAACATGGACCCCGGCGTCCTGTTCGGCTCCAAGGACTTCATCGAGAAGCGCGTCATGGACACCATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA