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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aacacaaacgtctcttcgtccgtttgtccacaatcaacacacccaaaccaccctacacacctacgcaaactctacacctccatacactgcacacccatagGTGTACCAGGACCTGTGCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAGCGCGTGGACCTGGCG

Basic information

species Chlamydomonas reinhardtii
transcript EDO98596
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14234526|gb|BG853342.1|BG853342
EST:     TGGAGCGCCCGCCCGTGTGGATGATGCGCCAGGCCGGCCGCTACCAGAAG                         GTGTACCAGGACCTGTGCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAG
genomic: TGGAGCGCCCGCCCGTGTGGATGATGCGCCAGGCCGGCCGCTACCAGAAGgtgagcggag ... acacccatagGTGTACCAGGACCTGTGCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAG
EST: gi|10777184|gb|AV633864.1|AV633864
EST:     TGGAGCGCCCGCCCGTGTGGATGATGCGCCAGGCCGGCCGCTACCAGAAG                         GTGTACCAGGACCTGTGCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAG
genomic: TGGAGCGCCCGCCCGTGTGGATGATGCGCCAGGCCGGCCGCTACCAGAAGgtgagcggag ... acacccatagGTGTACCAGGACCTGTGCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAG
EST: gi|10787211|gb|AV643883.1|AV643883
EST:     TGGAGCGCCCGCCCGTGTGGATGATGCGCCAGGCCGGCCGCTACCAGAAG                         GTGTACCAGGACCTGTGCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAG
genomic: TGGAGCGCCCGCCCGTGTGGATGATGCGCCAGGCCGGCCGCTACCAGAAGgtgagcggag ... acacccatagGTGTACCAGGACCTGTGCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAG
EST: gi|49465304|gb|BP093217.1|BP093217
EST:     TGGAGCGCCCGCCCGTGTGGATGATGCGCCAGGCCGGCCGCTACCAGAAG                         GTGTACCAGGACCTGTGCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAG
genomic: TGGAGCGCCCGCCCGTGTGGATGATGCGCCAGGCCGGCCGCTACCAGAAGgtgagcggag ... acacccatagGTGTACCAGGACCTGTGCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAG
EST: gi|161798329|gb|FC083512.1|FC083512
EST:     GTGGATGATGCGCCAGGCCGGCCGCTACCAGAAG                         GTGTACCAGGACCTGTGCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAG
genomic: GTGGATGATGCGCCAGGCCGGCCGCTACCAGAAGgtgagcggag ... acacccatagGTGTACCAGGACCTGTGCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAG
EST: gi|10785780|gb|AV642452.1|AV642452
EST:     TGGAGCGCCCGCCCGTGTGGATGATGCGCCAGGCCGGCCGCTACCAGAAG                         GTGTACCAGGACCTGTGCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAG
genomic: TGGAGCGCCCGCCCGTGTGGATGATGCGCCAGGCCGGCCGCTACCAGAAGgtgagcggag ... acacccatagGTGTACCAGGACCTGTGCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAG
EST: gi|7593543|gb|AW707794.1|AW707794
EST:     GGATGATGCGCCAGGCCGGCCGCTACCAGAAG                         GTGTACCAGGACCTGTGCAAGAAGCACCCCACGTTCCGTGAGCGCTCGAAG
genomic: GGATGATGCGCCAGGCCGGCCGCTACCAGAAGgtgagcggag ... acacccatagGTGTACCAGGACCTGTGCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAG
EST: gi|161799638|gb|FC083859.1|FC083859
EST:     TGGAGCGCCCGCCCGTGTGGATGATGCGCCAGGCCGGCCGCTACCAGAAG                         GTGTACCAGGACCTGTGCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAG
genomic: TGGAGCGCCCGCCCGTGTGGATGATGCGCCAGGCCGGCCGCTACCAGAAGgtgagcggag ... acacccatagGTGTACCAGGACCTGTGCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAG
EST: gi|10790731|gb|AV628097.1|AV628097
EST:     TGGAGCGCCCGCCCGTGTGGATGATGCGCCAGGCCGGCCGCTACCAGAAG                         GTGTACCAGGACCTGTGCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAG
genomic: TGGAGCGCCCGCCCGTGTGGATGATGCGCCAGGCCGGCCGCTACCAGAAGgtgagcggag ... acacccatagGTGTACCAGGACCTGTGCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAG
EST: gi|49466809|gb|BP094722.1|BP094722
EST:     TGGAGCGCCCGCCCGTGTGGATGATGCGCCAGGCCGGCCGCTACCAGAAG                         GTGTACCAGGACCTGTGCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAG
genomic: TGGAGCGCCCGCCCGTGTGGATGATGCGCCAGGCCGGCCGCTACCAGAAGgtgagcggag ... acacccatagGTGTACCAGGACCTGTGCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAG
EST: gi|49462355|gb|BP090268.1|BP090268
EST:     TGGAGCGCCCGCCCGTGTGGATGATGCGCCAGGCCGGCCGCTACCAGAAG                         GTGTACCAGGACCTGTGCAAGAAGCACCCCACGTTCCGTGAGCGCTCGG
genomic: TGGAGCGCCCGCCCGTGTGGATGATGCGCCAGGCCGGCCGCTACCAGAAGgtgagcggag ... acacccatagGTGTACCAGGACCTGTGCAAGAAGCACCCCACGTTCCGTGAGCGCTCGG
EST: gi|6547384|gb|AV393168.1|AV393168
EST:     TGGAGCGCCCGCCCGTGTGGATGATGCGCCAGGCCGGCCGCTACCAGAAG                         GTGTACCAGGACCTGTGCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAG
genomic: TGGAGCGCCCGCCCGTGTGGATGATGCGCCAGGCCGGCCGCTACCAGAAGgtgagcggag ... acacccatagGTGTACCAGGACCTGTGCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAG
EST: gi|22069992|gb|BQ819452.1|BQ819452
EST:     TGGAGCGCCCGCCCGTGTGGATGATGCGCCAGGCCGGCCGCTACCAGAAG                         GTGTTCCAGGACCTGTGCAAGAAGCACCCCACGTT
genomic: TGGAGCGCCCGCCCGTGTGGATGATGCGCCAGGCCGGCCGCTACCAGAAGgtgagcggag ... acacccatagGTGTACCAGGACCTGTGCAAGAAGCACCCCACGTT
EST: gi|15369674|gb|BI529100.1|BI529100
EST:     TGGAGCGCCCGCCCGTGTGGATGATGCGCCAGGCCGGCCGCTACCAGAAG                         GTGTACCAGGACCTGTGCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAG
genomic: TGGAGCGCCCGCCCGTGTGGATGATGCGCCAGGCCGGCCGCTACCAGAAGgtgagcggag ... acacccatagGTGTACCAGGACCTGTGCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aacacaaacgtctcttcgtccgtttgtccacaatcaacacacccaaaccaccctacacacctacgcaaactctacacctccatacactgcacacccatagGTGTACCAGGACCTGTGCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAGCGCGTGGACCTGGCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
-acacaaa
- - - - - - - - - - cgtttgt
- - - - - - - - - - - - - - -acaatca
- - - - - - - - - - - - - - - - - - acacacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acgcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacacct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccataca