1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCCGACGCCGGCGCCCAGGTGGTGCAGATCTTCGACTCGTGGGCCAGCGAGCTGCAGCCCCAGGACTTCGACGTGTTCTCCGGCCCCTACATCAAGAAGgtggggagcgcgtgagggggcgtgggggcgagaacccgagggcaagggcgtgagggcgagggcggggggggggatgcggagtcgtcgatgtggtggctgg...
species | Chlamydomonas reinhardtii |
transcript | EDO98596 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AGCTGCAGCCCCAGGACTTCGACGTGTTCTCCGGCCCCTACATCAAGAAG GTGATTGACAGCGTGCGCAAGACCCACCCCGACCTGCCCATCATCCTCTACEST: gi|161798329|gb|FC083512.1|FC083512
genomic: AGCTGCAGCCCCAGGACTTCGACGTGTTCTCCGGCCCCTACATCAAGAAGgtggggagcg ... atgtgcgcagGTGATCGACAGCGTGCGCAAGACCCACCCCGACCTGCCCATCATCCTCTAC
EST: CCTACATTGTGGAGGGCGGCAGCTCCAAGAACTTCGCGCACATCAAGAAGATGGCCTTCTCCACCCCCGAGEST: gi|10768967|gb|AV619792.1|AV619792
genomic: CCTACATTGTGGAGGGCGGCAGCTCCAAGAACTTCGCGCACATCAAGAAGATGGCTTTCTCCACCCCCGAGgtgag
EST: AGCTGCAGCCCCAGGACTTCGACGTGTTCTCCGGCCCCTACATCAAGAAG GTGATCGACAGCGTGCGCAAGACCCACCCCGACCTGCCCATCATCCTCTACEST: gi|6541232|gb|AV387016.1|AV387016
genomic: AGCTGCAGCCCCAGGACTTCGACGTGTTCTCCGGCCCCTACATCAAGAAGgtggggagcg ... atgtgcgcagGTGATCGACAGCGTGCGCAAGACCCACCCCGACCTGCCCATCATCCTCTAC
EST: CCTACATTGTGGAGGGCGGCAGCTCCAAGAACTTCGCGCACATCAAGAAGATGGCTTTCTCCACCCCCGAGEST: gi|15370170|gb|BI529596.1|BI529596
genomic: CCTACATTGTGGAGGGCGGCAGCTCCAAGAACTTCGCGCACATCAAGAAGATGGCTTTCTCCACCCCCGAGgtgag
EST: TCCAAGAACTTCGCGCACATCAAGAAGATGGCTTTCTCCACCCCCGAGEST: gi|15698489|gb|BI722794.1|BI722794
genomic: TCCAAGAACTTCGCGCACATCAAGAAGATGGCTTTCTCCACCCCCGAGgtgag
EST: CCTACATTGTGGAGGGCGGCAGCTCCAAGAACTTCGCGCACATCAAGAAGATGGCTTTCTCCACCCCCGAGEST: gi|10772473|gb|AV623296.1|AV623296
genomic: CCTACATTGTGGAGGGCGGCAGCTCCAAGAACTTCGCGCACATCAAGAAGATGGCTTTCTCCACCCCCGAGgtgag
EST: CTACA-TGTGGAGGGCGGCAGCTCCAAGAACTTCGCGCACATCAAGAAGATGGCTTTCTCCACCCCCGAGEST: gi|15696926|gb|BI721231.1|BI721231
genomic: CTACATTGTGGAGGGCGGCAGCTCCAAGAACTTCGCGCACATCAAGAAGATGGCTTTCTCCACCCCCGAGgtgag
EST: CCTACATTGTGGAGGGCGGCAGCTCCAAGAACTTCGCGCACATCAAGAAGATGGCTTTCTCCACCCCCGAGEST: gi|15368002|gb|BI527428.1|BI527428
genomic: CCTACATTGTGGAGGGCGGCAGCTCCAAGAACTTCGCGCACATCAAGAAGATGGCTTTCTCCACCCCCGAGgtgag
EST: CCTACATTGTGGAGGGCGGCAGCTCCAAGAACTTCGCGCACATCAAGAAGATGGCTTTCTCCACCCCCGAGEST: gi|15367759|gb|BI527185.1|BI527185
genomic: CCTACATTGTGGAGGGCGGCAGCTCCAAGAACTTCGCGCACATCAAGAAGATGGCTTTCTCCACCCCCGAGgtgag
EST: CCTACATTGTGGAGGGCGGCAGCTCCAAGAACTTCGCGCACATCAAGAAGATGGCTTTCTCCACCCCCGAGEST: gi|10779613|gb|AV636293.1|AV636293
genomic: CCTACATTGTGGAGGGCGGCAGCTCCAAGAACTTCGCGCACATCAAGAAGATGGCTTTCTCCACCCCCGAGgtgag
EST: AAGAACTTCGCGCACATCAAGAAGATGGCTTTCTCCACCCCCGAGEST: gi|16072373|gb|BI874369.1|BI874369
genomic: AAGAACTTCGCGCACATCAAGAAGATGGCTTTCTCCACCCCCGAGgtgag
EST: ATTGTGGAGGGCGGCAGCTCCAAGAACTTCGCGCACATCAAGAAGATGGCTTTCTCCACCCCCGAG
genomic: ATTGTGGAGGGCGGCAGCTCCAAGAACTTCGCGCACATCAAGAAGATGGCTTTCTCCACCCCCGAGgtgag
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCGACGCCGGCGCCCAGGTGGTGCAGATCTTCGACTCGTGGGCCAGCGAGCTGCAGCCCCAGGACTTCGACGTGTTCTCCGGCCCCTACATCAAGAAGgtggggagcgcgtgagggggcgtgggggcgagaacccgagggcaagggcgtgagggcgagggcggggggggggatgcggagtcgtcgatgtggtggctgg
- - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcgatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggctg