1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cacacgagggaacgcgcggcgagccgcactcttctcacctggttcttcatcctcctgcgtcctttcccttctcccttccctcctccctaactcctaacagCAAGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGTGGGCGAGTCGCTGCGCCAGCTGCGCACCTACATCGGCAACCAG
species | Chlamydomonas reinhardtii |
transcript | EDO98596 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCG CAAGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGTGEST: gi|10787211|gb|AV643883.1|AV643883
genomic: TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCGgtgagtggta ... ctcctaacagCAAGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGTG
EST: TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCG CAAGTGGAGAAGGTEST: gi|161798329|gb|FC083512.1|FC083512
genomic: TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCGgtgagtggta ... ctcctaacagCAAGTGGAGAAGGT
EST: TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCG CAAGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGTGEST: gi|15696926|gb|BI721231.1|BI721231
genomic: TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCGgtgagtggta ... ctcctaacagCAAGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGTG
EST: CGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCG CAAGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGTGEST: gi|10785780|gb|AV642452.1|AV642452
genomic: CGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCGgtgagtggta ... ctcctaacagCAAGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGTG
EST: TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCG CAAGTGGAGAAGGTEST: gi|7593543|gb|AW707794.1|AW707794
genomic: TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCGgtgagtggta ... ctcctaacagCAAGTGGAGAAGGT
EST: TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCG CAAGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGTGEST: gi|161799638|gb|FC083859.1|FC083859
genomic: TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCGgtgagtggta ... ctcctaacagCAAGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGTG
EST: TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCG CAAGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGTGEST: gi|10790731|gb|AV628097.1|AV628097
genomic: TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCGgtgagtggta ... ctcctaacagCAAGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGTG
EST: TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCG CAAGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGTGEST: gi|15368002|gb|BI527428.1|BI527428
genomic: TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCGgtgagtggta ... ctcctaacagCAAGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGTG
EST: TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCG CAAGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGTGEST: gi|15367759|gb|BI527185.1|BI527185
genomic: TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCGgtgagtggta ... ctcctaacagCAAGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGTG
EST: TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCG CAAGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGTGEST: gi|15369674|gb|BI529100.1|BI529100
genomic: TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCGgtgagtggta ... ctcctaacagCAAGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGTG
EST: TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCG CAAGGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGT
genomic: TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCGgtgagtggta ... ctcctaacagCAAG-TGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGT
ttcatcctcctgcgtcctttcccttctcccttccctcctccctaactcctaacagCAAGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGTGGGCGAGTCGCTGCGCCAGCTGCGCACCTACATCGGCAACCAG
ccctaac putative branch site (score: 2)
cgtcctttcccttctc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacacgagggaacgcgcggcgagccgcactcttctcacctggttcttcatcctcctgcgtcctttcccttctcccttccctcctccctaactcctaacagCAAGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGTGGGCGAGTCGCTGCGCCAGCTGCGCACCTACATCGGCAACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
cacacga
- - - - - - - - - - -agccgca