1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGCTGCTCAACAGTGTGTTGGCAGCGTCCTAGGTCACCAACCCACAATGCAGACCAAGGCTTTCACCTCTGCGCGCCCCCAGCGGGCCGCTGCGCTCAAGgtctgtgggaacgagcttgtctggccgtagatctagcagtaattgagccagtccagcgcgatgcctgcccgaaatacgttgcttgccggcggagcgagca...
species | Chlamydomonas reinhardtii |
transcript | EDO98596 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGACCAAGGCTTTCACCTCTGCGCGCCCCCAGCGGGCCGCTGCGCTCAAG GCGCAGCGCACCTCGTCGGTGACCGTGCGCGCGACCGCGGCTCCCGCCGTGEST: gi|10777184|gb|AV633864.1|AV633864
genomic: AGACCAAGGCTTTCACCTCTGCGCGCCCCCAGCGGGCCGCTGCGCTCAAGgtctgtggga ... ccttgctcagGCGCAGCGCACCTCGTCGGTGACCGTGCGCGCGACCGCGGCCCCCGCCGTG
EST: AGACCAAGGCTTTCACCTCTGCGCGCCCCCAGCGGGCCGCTGCGCTCAAG GCGCAGCGCACCTCGTCGGTGACCGTGCGCGCGACCGCGGCCCCCGCCGTGEST: gi|10787211|gb|AV643883.1|AV643883
genomic: AGACCAAGGCTTTCACCTCTGCGCGCCCCCAGCGGGCCGCTGCGCTCAAGgtctgtggga ... ccttgctcagGCGCAGCGCACCTCGTCGGTGACCGTGCGCGCGACCGCGGCCCCCGCCGTG
EST: AGACCAAGGCTTTCACCTCTGCGCGCCCCCAGCGGGCCGCTGCGCTCAAG GCGCAGCGCACCTCGTCGGTGACCGTGCGCGCGACCGCGGCCCCCGCCGTGEST: gi|49465304|gb|BP093217.1|BP093217
genomic: AGACCAAGGCTTTCACCTCTGCGCGCCCCCAGCGGGCCGCTGCGCTCAAGgtctgtggga ... ccttgctcagGCGCAGCGCACCTCGTCGGTGACCGTGCGCGCGACCGCGGCCCCCGCCGTG
EST: AGACCAAGGCTTTCACCTCTGCGCGCCCCCAGCGGGCCGCTGCGCTCAAG GCGCAGCGCACCTCGTCGGTGACCGTGCGCGCGACCGCGGCCCCCGCCGTGEST: gi|10785780|gb|AV642452.1|AV642452
genomic: AGACCAAGGCTTTCACCTCTGCGCGCCCCCAGCGGGCCGCTGCGCTCAAGgtctgtggga ... ccttgctcagGCGCAGCGCACCTCGTCGGTGACCGTGCGCGCGACCGCGGCCCCCGCCGTG
EST: AGACCAAGGCTTTCACCTCTGCGCGCCCCCAGCGGGCCGCTGCGCTCAAG GCGCAGCGCACCTCGTCGGTGACCGTGCGCGCGACCGCGGCCCCCGCCGTGEST: gi|161799638|gb|FC083859.1|FC083859
genomic: AGACCAAGGCTTTCACCTCTGCGCGCCCCCAGCGGGCCGCTGCGCTCAAGgtctgtggga ... ccttgctcagGCGCAGCGCACCTCGTCGGTGACCGTGCGCGCGACCGCGGCCCCCGCCGTG
EST: AGACCAAGGCTTTCACCTCTGCGCGCCCCCAGCGGGCCGCTGCGCTCAAG GCGCAGCGCACCTCGTCGGTGACCGTGCGCGCGACCGCGGCCCCCGCCGTGEST: gi|10790731|gb|AV628097.1|AV628097
genomic: AGACCAAGGCTTTCACCTCTGCGCGCCCCCAGCGGGCCGCTGCGCTCAAGgtctgtggga ... ccttgctcagGCGCAGCGCACCTCGTCGGTGACCGTGCGCGCGACCGCGGCCCCCGCCGTG
EST: AGACCAAGGCTTTCACCTCTGCGCGCCCCCAGCGGGCCGCTGCGCTCAAG GCGCAGCGCACCTCGTCGGTGACCGTGCGCGCGACCGCGGCCCCCGCCGTGEST: gi|49466809|gb|BP094722.1|BP094722
genomic: AGACCAAGGCTTTCACCTCTGCGCGCCCCCAGCGGGCCGCTGCGCTCAAGgtctgtggga ... ccttgctcagGCGCAGCGCACCTCGTCGGTGACCGTGCGCGCGACCGCGGCCCCCGCCGTG
EST: AGACCAAGGCTTTCACCTCTGCGCGCCCCCAGCGGGCCGCTGCGCTCAAG GCGCAGCGCACCTCGTCGGTGACCGTGCGCGCGACCGTGGCCCCCGCCGTGEST: gi|49462355|gb|BP090268.1|BP090268
genomic: AGACCAAGGCTTTCACCTCTGCGCGCCCCCAGCGGGCCGCTGCGCTCAAGgtctgtggga ... ccttgctcagGCGCAGCGCACCTCGTCGGTGACCGTGCGCGCGACCGCGGCCCCCGCCGTG
EST: AGACCAAGGCTTTCACCTCTGCGCGCCCCCAGCGGGCCGCTGCGCTCAAG GCGCAGCGCACCTCGTCGGTGACCGTGCGCGCGACCGCGGCCCCCGCCGTGEST: gi|6547384|gb|AV393168.1|AV393168
genomic: AGACCAAGGCTTTCACCTCTGCGCGCCCCCAGCGGGCCGCTGCGCTCAAGgtctgtggga ... ccttgctcagGCGCAGCGCACCTCGTCGGTGACCGTGCGCGCGACCGCGGCCCCCGCCGTG
EST: AGACCAAGGCTTTCACCTCTGCGCGCCCCCAGCGGGCCGCTGCGCTCAAG GCGCAGCGCACCTCGTCGGTGACCGTGCGCGCGACCGCGGCCCCCGCCGTGEST: gi|22069992|gb|BQ819452.1|BQ819452
genomic: AGACCAAGGCTTTCACCTCTGCGCGCCCCCAGCGGGCCGCTGCGCTCAAGgtctgtggga ... ccttgctcagGCGCAGCGCACCTCGTCGGTGACCGTGCGCGCGACCGCGGCCCCCGCCGTG
EST: AGACCAAGGCTTTCACCTCTGCGCGCCCCCAGCGGGCCGCTGCGCTCAAG GCGCAGCGCACCTCGTCGGTGACCGTGCGCGCGACCGCGGCTCCCGCCGTGEST: gi|49463383|gb|BP091296.1|BP091296
genomic: AGACCAAGGCTTTCACCTCTGCGCGCCCCCAGCGGGCCGCTGCGCTCAAGgtctgtggga ... ccttgctcagGCGCAGCGCACCTCGTCGGTGACCGTGCGCGCGACCGCGGCCCCCGCCGTG
EST: AGACCAAGGCTTTCACCTCTGCGCGCCCCCAGCGGGCCGCTGCGCTCAAG GCGCAGCGCACCTCGTCGGTGACCGTGCGCGCGACCGCGGCCCCCGCCGTGEST: gi|15369674|gb|BI529100.1|BI529100
genomic: AGACCAAGGCTTTCACCTCTGCGCGCCCCCAGCGGGCCGCTGCGCTCAAGgtctgtggga ... ccttgctcagGCGCAGCGCACCTCGTCGGTGACCGTGCGCGCGACCGCGGCCCCCGCCGTG
EST: AGACCAAGGCTTTCACCTCTGCGCGCCCCCAGCGGGCCGCTGCGCTCAAG GCGCAGCGCACCTCGTCGGTGACCGTGCGCGCGACCGCGGCTCCCGCCGTG
genomic: AGACCAAGGCTTTCACCTCTGCGCGCCCCCAGCGGGCCGCTGCGCTCAAGgtctgtggga ... ccttgctcagGCGCAGCGCACCTCGTCGGTGACCGTGCGCGCGACCGCGGCCCCCGCCGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTGCTCAACAGTGTGTTGGCAGCGTCCTAGGTCACCAACCCACAATGCAGACCAAGGCTTTCACCTCTGCGCGCCCCCAGCGGGCCGCTGCGCTCAAGgtctgtgggaacgagcttgtctggccgtagatctagcagtaattgagccagtccagcgcgatgcctgcccgaaatacgttgcttgccggcggagcgagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtctgg
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgcttg