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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTACCAGGACCTGTGCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAGCGCGTGGACCTGGCGgtgagtggggggaagtgggggctgcgagggactaaggttttgtgtgcgttgaccggcgttgactctgtgggcgactagctcgctggcgacttggatcagc...

Basic information

species Chlamydomonas reinhardtii
transcript EDO98596
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14234526|gb|BG853342.1|BG853342
EST:     GCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAGCGCGTGGACCTGGCG                         GTGGAGATCTCTCTGCAGCCGTGGCACGCGTTCAAGCCCGACGGCGTCATC
genomic: GCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAGCGCGTGGACCTGGCGgtgagtgggg ... cgcctcgcagGTGGAGATCTCTCTGCAGCCGTGGCACGCGTTCAAGCCCGACGGCGTCATC
EST: gi|10777184|gb|AV633864.1|AV633864
EST:     GCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAGCGCGTGGACCTGGCG                         GTGGAGATCTCTCTGCAGCCGTGGCACGCGTTCAAGCCCGACGGCGTCATC
genomic: GCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAGCGCGTGGACCTGGCGgtgagtgggg ... cgcctcgcagGTGGAGATCTCTCTGCAGCCGTGGCACGCGTTCAAGCCCGACGGCGTCATC
EST: gi|10787211|gb|AV643883.1|AV643883
EST:     GCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAGCGCGTGGACCTGGCG                         GTGGAGATCTCTCTGCAGCCGTGGCACGCGTTCAAGCCCGACGGCGTCATC
genomic: GCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAGCGCGTGGACCTGGCGgtgagtgggg ... cgcctcgcagGTGGAGATCTCTCTGCAGCCGTGGCACGCGTTCAAGCCCGACGGCGTCATC
EST: gi|49465304|gb|BP093217.1|BP093217
EST:     GCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAGCGCGTGGACCTGGCG                         GTGGAGATCTCTCTGCAGCCGTGGCACGCGTTCAAGCCCGACGGCGTCATC
genomic: GCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAGCGCGTGGACCTGGCGgtgagtgggg ... cgcctcgcagGTGGAGATCTCTCTGCAGCCGTGGCACGCGTTCAAGCCCGACGGCGTCATC
EST: gi|161798329|gb|FC083512.1|FC083512
EST:     GCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAGCGCGTGGACCTGGCG                         GTTGAGATCTCTCTGCAGCCGTGGCACGCGTTCAAGCCCGACGGCGTCATC
genomic: GCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAGCGCGTGGACCTGGCGgtgagtgggg ... cgcctcgcagGTGGAGATCTCTCTGCAGCCGTGGCACGCGTTCAAGCCCGACGGCGTCATC
EST: gi|10785780|gb|AV642452.1|AV642452
EST:     GCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAGCGCGTGGACCTGGCG                         GTGGAGATCTCTCTGCAGCCGTGGCACGCGTTCAAGCCCGACGGCGTCATC
genomic: GCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAGCGCGTGGACCTGGCGgtgagtgggg ... cgcctcgcagGTGGAGATCTCTCTGCAGCCGTGGCACGCGTTCAAGCCCGACGGCGTCATC
EST: gi|7593543|gb|AW707794.1|AW707794
EST:     GCAAGAAGCACCCCACGTTCCGTGAGCGCTCGAAGCGCGTGGACCTGGCG                         GTGGAGATCTCTCTGCAGCCGTGGCACGCGTTCAAGCCCGACGGCGTCATC
genomic: GCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAGCGCGTGGACCTGGCGgtgagtgggg ... cgcctcgcagGTGGAGATCTCTCTGCAGCCGTGGCACGCGTTCAAGCCCGACGGCGTCATC
EST: gi|161799638|gb|FC083859.1|FC083859
EST:     GCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAGCGCGTGGACCTGGCG                         GTTGAGATCTCTCTGCAGCCGTGGCACGCGTTCAAGCCCGACGGCGTCATC
genomic: GCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAGCGCGTGGACCTGGCGgtgagtgggg ... cgcctcgcagGTGGAGATCTCTCTGCAGCCGTGGCACGCGTTCAAGCCCGACGGCGTCATC
EST: gi|10790731|gb|AV628097.1|AV628097
EST:     GCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAGCGCGTGGACCTGGCG                         GTGGAGATCTCTCTGCAGCCGTGGCACGCGTTCAAGCCCGACGGCGTCATC
genomic: GCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAGCGCGTGGACCTGGCGgtgagtgggg ... cgcctcgcagGTGGAGATCTCTCTGCAGCCGTGGCACGCGTTCAAGCCCGACGGCGTCATC
EST: gi|15368002|gb|BI527428.1|BI527428
EST:     GCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAGCGCGTGGACCTGGCG                         GTGGAGATCTCTCTGCAGCCGTGGCACGCGTTCAAGCCCGACGGCGTCATC
genomic: GCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAGCGCGTGGACCTGGCGgtgagtgggg ... cgcctcgcagGTGGAGATCTCTCTGCAGCCGTGGCACGCGTTCAAGCCCGACGGCGTCATC
EST: gi|6547384|gb|AV393168.1|AV393168
EST:     GCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAGCGCGTGGACCTGGCG                         GTGGAGATCTCTCTGCAGCCGTGGCACGCGTTCAAGCCCGACGGCGTCATC
genomic: GCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAGCGCGTGGACCTGGCGgtgagtgggg ... cgcctcgcagGTGGAGATCTCTCTGCAGCCGTGGCACGCGTTCAAGCCCGACGGCGTCATC
EST: gi|15367759|gb|BI527185.1|BI527185
EST:     GCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAGCGCGTGGACCTGGCG                         GTGGAGATCTCTCTGCAGCCGTGGCACGCGTTCAAGCCCGACGGCGTCATC
genomic: GCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAGCGCGTGGACCTGGCGgtgagtgggg ... cgcctcgcagGTGGAGATCTCTCTGCAGCCGTGGCACGCGTTCAAGCCCGACGGCGTCATC
EST: gi|15369674|gb|BI529100.1|BI529100
EST:     CAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAGCGCGTGG-CCTTGGCG                         GTGGAGATCTCTCTGCAGCCGTGGCACGCGTTCAAGCCCGACGGCGTCAT
genomic: CAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAGCGCGTGGACCT-GGCGgtgagtgggg ... cgcctcgcagGTGGAGATCTCTCTGCAGCCGTGGCACGCGTTCAAGCCCGACGGCGTCAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGTACCAGGACCTGTGCAAGAAGCACCCCACGTTCCGTGAGCGCTCGGAGCGCGTGGACCTGGCGgtgagtggggggaagtgggggctgcgagggactaaggttttgtgtgcgttgaccggcgttgactctgtgggcgactagctcgctggcgacttggatcagc

- - - - - - - - GCAAGA
- - - - - - - - - AAGAAG
- - - - - - - - -  AGAAGC
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