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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCCTGTTCAGCGACATTCTGACCCCCCTGCCCGGCATGAACATCCCCTTCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCGgtgagtggtacggcacggcagaagtacggcattagtacggcaatagtacgatagagcgacaattggaagtagcaggaaaatgggtatggagagcgacaaa...

Basic information

species Chlamydomonas reinhardtii
transcript EDO98596
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14234526|gb|BG853342.1|BG853342
EST:     TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCG                         CAAGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGTG
genomic: TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCGgtgagtggta ... ctcctaacagCAAGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGTG
EST: gi|10787211|gb|AV643883.1|AV643883
EST:     TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCG                         CAAGTGGAGAAGGT
genomic: TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCGgtgagtggta ... ctcctaacagCAAGTGGAGAAGGT
EST: gi|161798329|gb|FC083512.1|FC083512
EST:     TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCG                         CAAGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGTG
genomic: TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCGgtgagtggta ... ctcctaacagCAAGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGTG
EST: gi|15696926|gb|BI721231.1|BI721231
EST:     CGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCG                         CAAGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGTG
genomic: CGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCGgtgagtggta ... ctcctaacagCAAGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGTG
EST: gi|10785780|gb|AV642452.1|AV642452
EST:     TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCG                         CAAGTGGAGAAGGT
genomic: TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCGgtgagtggta ... ctcctaacagCAAGTGGAGAAGGT
EST: gi|7593543|gb|AW707794.1|AW707794
EST:     TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCG                         CAAGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGTG
genomic: TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCGgtgagtggta ... ctcctaacagCAAGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGTG
EST: gi|161799638|gb|FC083859.1|FC083859
EST:     TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCG                         CAAGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGTG
genomic: TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCGgtgagtggta ... ctcctaacagCAAGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGTG
EST: gi|10790731|gb|AV628097.1|AV628097
EST:     TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCG                         CAAGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGTG
genomic: TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCGgtgagtggta ... ctcctaacagCAAGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGTG
EST: gi|15368002|gb|BI527428.1|BI527428
EST:     TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCG                         CAAGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGTG
genomic: TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCGgtgagtggta ... ctcctaacagCAAGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGTG
EST: gi|15367759|gb|BI527185.1|BI527185
EST:     TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCG                         CAAGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGTG
genomic: TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCGgtgagtggta ... ctcctaacagCAAGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGTG
EST: gi|15369674|gb|BI529100.1|BI529100
EST:     TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCG                         CAAGGTGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGT
genomic: TCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCGgtgagtggta ... ctcctaacagCAAG-TGGAGAAGGTGACGAAGCTGGACGCTGAGGCCGCCTGCCCCTTCGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATCCTGTTCAGCGACATTCTGACCCCCCTGCCCGGCATGAACATCCCCTTCGACATGGCGCCCGGCCCCATCATCATGGACCCCATCCGCACCATGGCGgtgagtggtacggcacggcagaagtacggcattagtacggcaatagtacgatagagcgacaattggaagtagcaggaaaatgggtatggagagcgacaaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggtat