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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCGCATGGCCTCTTGCTCGCCCGACATCATCTCGCTGGACCAGTCGGTGGACTTCACCGACGGCGTCAAGCGCTGCGGCACCAACTTCGCCTTCCAGgtgcgtgctgcgttgtgtgtgtgtgtactgatctgtcggctggggttgcggactgctgacagaatgacagagctgacaggatgcacattccggtagacccccgtacgcgttggcagcccgcatcccacacgcgaccccatgaccacaccttactctgtttccccgacaccgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98596
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8287231|gb|BE024790.1|BE024790
EST:     TGGACTTCACCGACGGCGTGAAGCGCTGCGGCACCAACTTCGCCTTCCAG                         GGCAACATGGACCCCGGCGTCCTGTTCGGCTCCAAGGACTTCATCGAGAAG
genomic: TGGACTTCACCGACGGCGTCAAGCGCTGCGGCACCAACTTCGCCTTCCAGgtgcgtgctg ... gacaccgcagGGCAACATGGACCCCGGCGTCCTGTTCGGCTCCAAGGACTTCATCGAGAAG
EST: gi|10768967|gb|AV619792.1|AV619792
EST:     TGGACTTCACCGACGGCGTCAAGCGCTGCGGCACCAACTTCGCCTTCCAG                         GGCAACATGGACCCCGGCGTCCTGTTCGGCTCCAAGGACTTCATCGAGAAG
genomic: TGGACTTCACCGACGGCGTCAAGCGCTGCGGCACCAACTTCGCCTTCCAGgtgcgtgctg ... gacaccgcagGGCAACATGGACCCCGGCGTCCTGTTCGGCTCCAAGGACTTCATCGAGAAG
EST: gi|15370170|gb|BI529596.1|BI529596
EST:     TGGACTTCACCGACGGCGTGAAGCGCTGCGGCACCAACTTCGCCTTCCAG                         GGCAACATGGACCCCGGCGTCCTGTTCGGCTCCAAGGACTTCATCGAGAAG
genomic: TGGACTTCACCGACGGCGTCAAGCGCTGCGGCACCAACTTCGCCTTCCAGgtgcgtgctg ... gacaccgcagGGCAACATGGACCCCGGCGTCCTGTTCGGCTCCAAGGACTTCATCGAGAAG
EST: gi|15698489|gb|BI722794.1|BI722794
EST:     TGGACTTCACCGACGGCGTGAAGCGCTGCGGCACCAACTTCGCCTTCCAG                         GGCAACATGGACCCCGGCGTCCTGTTCGGCTCCAAGGACTTCATCGAGAAG
genomic: TGGACTTCACCGACGGCGTCAAGCGCTGCGGCACCAACTTCGCCTTCCAGgtgcgtgctg ... gacaccgcagGGCAACATGGACCCCGGCGTCCTGTTCGGCTCCAAGGACTTCATCGAGAAG
EST: gi|10772473|gb|AV623296.1|AV623296
EST:     TGGACTTCACCGACGGCGTCAAGCGCTGCGGCACCAACTTCGCCTTCCAG                         GGCAACATGGACCCCGGCGTCCTGTTCGGCTCCAAGGACTTCATCGAGAAG
genomic: TGGACTTCACCGACGGCGTCAAGCGCTGCGGCACCAACTTCGCCTTCCAGgtgcgtgctg ... gacaccgcagGGCAACATGGACCCCGGCGTCCTGTTCGGCTCCAAGGACTTCATCGAGAAG
EST: gi|10779613|gb|AV636293.1|AV636293
EST:     TGGACTTCACCGACGGCGTCAAGCGCTGCGGCACCAACTTCGCCTTCCAG                         GGCAACATGGACCCCGGCGTCCTGTTCGGCTCCAAGGACTTCATCGAGAAG
genomic: TGGACTTCACCGACGGCGTCAAGCGCTGCGGCACCAACTTCGCCTTCCAGgtgcgtgctg ... gacaccgcagGGCAACATGGACCCCGGCGTCCTGTTCGGCTCCAAGGACTTCATCGAGAAG
EST: gi|16072373|gb|BI874369.1|BI874369
EST:     TGGACTTCACCGACGGCGTCAAGCGCTGCGGCACCAACTTCGCCTTCCAG                         GGCAACATGGACCCCGGCGTCCTGTTCGGCTCCAAGGACTTCATCGAGAAG
genomic: TGGACTTCACCGACGGCGTCAAGCGCTGCGGCACCAACTTCGCCTTCCAGgtgcgtgctg ... gacaccgcagGGCAACATGGACCCCGGCGTCCTGTTCGGCTCCAAGGACTTCATCGAGAAG