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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCCAAGGAGGTGGAAAAGTACCAGAAGCTGCTGGAGGACGCGGCGGGCGGCGAGTTCAAGGTGTTCAAGGAGGGCGACGACGTGGACGGCGTGCACTGgtgcgcggctggaaggggatgcgctgcggcgaggcagggaggggcggggtggggcaagggtattgggtagcgcttgaacactgctcgcgctttgtttcaa...

Basic information

species Chlamydomonas reinhardtii
transcript EDO98373
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10776597|gb|AV633277.1|AV633277
EST:     GGCGAGTTCAAGGTGTTCAAGGAGGGCGACGACGTGGACGGCGTGCACTG                         GTACGGGCACCACACCCAGGCGCCCACCGGCTACTCGCTGTACGTGTTCCG
genomic: GGCGAGTTCAAGGTGTTCAAGGAGGGCGACGACGTGGACGGCGTGCACTGgtgcgcggct ... caccccacagGTACGGGCACCACACCCAGGCGCCCACCGGCTACTCGCTGTACGTGTTCCG
EST: gi|22058246|gb|BQ812911.1|BQ812911
EST:     GGCGAGTTCAAGGTGTTCAAGGAGGGCGACGACGTGGACGGCGTGCACTG                         GTACGGGCACCACACCCAGGCGCCCACCGGCTACTCGCTGTACGTGTTCCG
genomic: GGCGAGTTCAAGGTGTTCAAGGAGGGCGACGACGTGGACGGCGTGCACTGgtgcgcggct ... caccccacagGTACGGGCACCACACCCAGGCGCCCACCGGCTACTCGCTGTACGTGTTCCG
EST: gi|161820970|gb|FC110474.1|FC110474
EST:     GGCGAGTTTAAGGTGTTCAAGGAGGGCGACGACGTGGACGGCGTGCACTG                         GTACGGGCACCACACCCAGGCGCCTACCGGCTACTCTCTGTACGTCTTCCG
genomic: GGCGAGTTCAAGGTGTTCAAGGAGGGCGACGACGTGGACGGCGTGCACTGgtgcgcggct ... caccccacagGTACGGGCACCACACCCAGGCGCCCACCGGCTACTCGCTGTACGTGTTCCG
EST: gi|15701457|gb|BI725762.1|BI725762
EST:     GGCGAGTTCAAGGTGTTCAAGGAGGGCGACGACGTGGACGGCGTGCACTG                         GTACGGGCACCACACCCAGGCGCCCACCGGC
genomic: GGCGAGTTCAAGGTGTTCAAGGAGGGCGACGACGTGGACGGCGTGCACTGgtgcgcggct ... caccccacagGTACGGGCACCACACCCAGGCGCCCACCGGC
EST: gi|161798100|gb|FC082636.1|FC082636
EST:     GGCGAGTTTAAGGTGTTCAAGGAGGGCGACGACGTGGACGGCGTGCACTG                         GTACGGGCACCACACCCAGGCGCCTACCGGCTACTCTCTGTACGTCTTCCG
genomic: GGCGAGTTCAAGGTGTTCAAGGAGGGCGACGACGTGGACGGCGTGCACTGgtgcgcggct ... caccccacagGTACGGGCACCACACCCAGGCGCCCACCGGCTACTCGCTGTACGTGTTCCG
EST: gi|10127859|gb|BE726563.1|BE726563
EST:     CGACGTGGACGGCGTGCACTG                         GTACGGGCACCACACCCAGGCGCCCACCGGCTACTCGCTGTACGTGTTCCG
genomic: CGACGTGGACGGCGTGCACTGgtgcgcggct ... caccccacagGTACGGGCACCACACCCAGGCGCCCACCGGCTACTCGCTGTACGTGTTCCG
EST: gi|161794466|gb|FC080782.1|FC080782
EST:     GGCGAGTTTAAGGTGTTCAAGGAGGGCGACGACGTGGACGGCGTGCACTG                         GTACGGGCACCACACCCAGGCGCCTACCGGCTACTCTCTGTACGTCTTCCG
genomic: GGCGAGTTCAAGGTGTTCAAGGAGGGCGACGACGTGGACGGCGTGCACTGgtgcgcggct ... caccccacagGTACGGGCACCACACCCAGGCGCCCACCGGCTACTCGCTGTACGTGTTCCG
EST: gi|161802251|gb|FC091568.1|FC091568
EST:     GGCGAGTTTAAGGTGTTCAAGGAGGGCGACGACGTGGACGGCGTGCACTG                         GTACGGGCACCACACCCAGGCGCCTACCGGCTACTCTCTGTACGTCTTCCG
genomic: GGCGAGTTCAAGGTGTTCAAGGAGGGCGACGACGTGGACGGCGTGCACTGgtgcgcggct ... caccccacagGTACGGGCACCACACCCAGGCGCCCACCGGCTACTCGCTGTACGTGTTCCG
EST: gi|161819437|gb|FC109409.1|FC109409
EST:     GGCGAGTTTAAGGTGTTCAAGGAGGGCGACGACGTGGACGGCGTGCACTG                         GTACGGGCACCACACCCAGGCGCCTACCGGCTACTCTCTGTACGTCTTCCG
genomic: GGCGAGTTCAAGGTGTTCAAGGAGGGCGACGACGTGGACGGCGTGCACTGgtgcgcggct ... caccccacagGTACGGGCACCACACCCAGGCGCCCACCGGCTACTCGCTGTACGTGTTCCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGCCAAGGAGGTGGAAAAGTACCAGAAGCTGCTGGAGGACGCGGCGGGCGGCGAGTTCAAGGTGTTCAAGGAGGGCGACGACGTGGACGGCGTGCACTGgtgcgcggctggaaggggatgcgctgcggcgaggcagggaggggcggggtggggcaagggtattgggtagcgcttgaacactgctcgcgctttgtttcaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgttt