1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cgcatctgccccgtcgcctgcgctcaccaccgtacacacccatacccacactgactcgcatccactcacccattcaaaccgacgtgcccgcaccccacagGTACGGGCACCACACCCAGGCGCCCACCGGCTACTCGCTGTACGTGTTCCGCGAGGCGCTGGTGCCCAAGCAGTACTCACCCGCCAGCATGCGCCCCATT
species | Chlamydomonas reinhardtii |
transcript | EDO98373 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGCGAGTTCAAGGTGTTCAAGGAGGGCGACGACGTGGACGGCGTGCACTG GTACGGGCACCACACCCAGGCGCCCACCGGCTACTCGCTGTACGTGTTCCGEST: gi|22058246|gb|BQ812911.1|BQ812911
genomic: GGCGAGTTCAAGGTGTTCAAGGAGGGCGACGACGTGGACGGCGTGCACTGgtgcgcggct ... caccccacagGTACGGGCACCACACCCAGGCGCCCACCGGCTACTCGCTGTACGTGTTCCG
EST: GGCGAGTTCAAGGTGTTCAAGGAGGGCGACGACGTGGACGGCGTGCACTG GTACGGGCACCACACCCAGGCGCCCACCGGCTACTCGCTGTACGTGTTCCGEST: gi|161820970|gb|FC110474.1|FC110474
genomic: GGCGAGTTCAAGGTGTTCAAGGAGGGCGACGACGTGGACGGCGTGCACTGgtgcgcggct ... caccccacagGTACGGGCACCACACCCAGGCGCCCACCGGCTACTCGCTGTACGTGTTCCG
EST: GGCGAGTTTAAGGTGTTCAAGGAGGGCGACGACGTGGACGGCGTGCACTG GTACGGGCACCACACCCAGGCGCCTACCGGCTACTCTCTGTACGTCTTCCGEST: gi|15701457|gb|BI725762.1|BI725762
genomic: GGCGAGTTCAAGGTGTTCAAGGAGGGCGACGACGTGGACGGCGTGCACTGgtgcgcggct ... caccccacagGTACGGGCACCACACCCAGGCGCCCACCGGCTACTCGCTGTACGTGTTCCG
EST: GGCGAGTTCAAGGTGTTCAAGGAGGGCGACGACGTGGACGGCGTGCACTG GTACGGGCACCACACCCAGGCGCCCACCGGCEST: gi|161798100|gb|FC082636.1|FC082636
genomic: GGCGAGTTCAAGGTGTTCAAGGAGGGCGACGACGTGGACGGCGTGCACTGgtgcgcggct ... caccccacagGTACGGGCACCACACCCAGGCGCCCACCGGC
EST: GGCGAGTTTAAGGTGTTCAAGGAGGGCGACGACGTGGACGGCGTGCACTG GTACGGGCACCACACCCAGGCGCCTACCGGCTACTCTCTGTACGTCTTCCGEST: gi|10127859|gb|BE726563.1|BE726563
genomic: GGCGAGTTCAAGGTGTTCAAGGAGGGCGACGACGTGGACGGCGTGCACTGgtgcgcggct ... caccccacagGTACGGGCACCACACCCAGGCGCCCACCGGCTACTCGCTGTACGTGTTCCG
EST: CGACGTGGACGGCGTGCACTG GTACGGGCACCACACCCAGGCGCCCACCGGCTACTCGCTGTACGTGTTCCGEST: gi|161794466|gb|FC080782.1|FC080782
genomic: CGACGTGGACGGCGTGCACTGgtgcgcggct ... caccccacagGTACGGGCACCACACCCAGGCGCCCACCGGCTACTCGCTGTACGTGTTCCG
EST: GGCGAGTTTAAGGTGTTCAAGGAGGGCGACGACGTGGACGGCGTGCACTG GTACGGGCACCACACCCAGGCGCCTACCGGCTACTCTCTGTACGTCTTCCGEST: gi|161802251|gb|FC091568.1|FC091568
genomic: GGCGAGTTCAAGGTGTTCAAGGAGGGCGACGACGTGGACGGCGTGCACTGgtgcgcggct ... caccccacagGTACGGGCACCACACCCAGGCGCCCACCGGCTACTCGCTGTACGTGTTCCG
EST: GGCGAGTTTAAGGTGTTCAAGGAGGGCGACGACGTGGACGGCGTGCACTG GTACGGGCACCACACCCAGGCGCCTACCGGCTACTCTCTGTACGTCTTCCGEST: gi|161819437|gb|FC109409.1|FC109409
genomic: GGCGAGTTCAAGGTGTTCAAGGAGGGCGACGACGTGGACGGCGTGCACTGgtgcgcggct ... caccccacagGTACGGGCACCACACCCAGGCGCCCACCGGCTACTCGCTGTACGTGTTCCG
EST: GGCGAGTTTAAGGTGTTCAAGGAGGGCGACGACGTGGACGGCGTGCACTG GTACGGGCACCACACCCAGGCGCCTACCGGCTACTCTCTGTACGTCTTCCG
genomic: GGCGAGTTCAAGGTGTTCAAGGAGGGCGACGACGTGGACGGCGTGCACTGgtgcgcggct ... caccccacagGTACGGGCACCACACCCAGGCGCCCACCGGCTACTCGCTGTACGTGTTCCG
ccacactgactcgcatccactcacccattcaaaccgacgtgcccgcaccccacagGTACGGGCACCACACCCAGGCGCCCACCGGCTACTCGCTGTACGTGTTCCGCGAGGCGCTGGTGCCCAAGCAGTACTCACCCGCCAGCATGCGCCCCATT
cactcac putative branch site (score: 2)
attcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgcatctgccccgtcgcctgcgctcaccaccgtacacacccatacccacactgactcgcatccactcacccattcaaaccgacgtgcccgcaccccacagGTACGGGCACCACACCCAGGCGCCCACCGGCTACTCGCTGTACGTGTTCCGCGAGGCGCTGGTGCCCAAGCAGTACTCACCCGCCAGCATGCGCCCCATT
- - - - - - - - - - - - caccacc
- - - - - - - - - - - - - - - - -acacacc
- - - - - - - - - - - - - - - - - - - - - -acccaca
- - - - - - - - - - - - - - - - - - - - - - - - - - -actcgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acccatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaccga