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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcgtgaatgccgcgtgcaccgccacctcgcacccaccacacacccaccgcctgcctctccagccgcactttcaacgcccgcctcgccctcgcaatcgcagAGGCGCTGCTGCACGCCGCCAAGGGCCTGGAGGGCTCTCTGTCTGCGGACGAGGCCAAGGAGGTGGAAAAGTACCAGAAGCTGCTGGAGGACGCGGCGGG

Basic information

species Chlamydomonas reinhardtii
transcript EDO98373
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10776597|gb|AV633277.1|AV633277
EST:     CAAGGCCCTGCGCGCCTTCCACCGCTTCAACTTCTGGCCCGACGCCACCG                         AGGCGCTGCTGCACGCCGCCAAGGGCCTGGAGGGCTCTCTGTCTGCGGACG
genomic: CAAGGCCCTGCGCGCCTTCCACCGCTTCAACTTCTGGCCCGACGCCACCGgtgcgtcata ... gcaatcgcagAGGCGCTGCTGCACGCCGCCAAGGGCCTGGAGGGCTCTCTGTCTGCGGACG
EST: gi|22058246|gb|BQ812911.1|BQ812911
EST:     GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGACGACATCGCCGACTCCATCACCTACTGCAACCACTACCTGGCGCCCGTGCGGGCCTGCCCCAGTCAGCT
genomic: GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGACGACATCGCCGACTCCATCACCTACTGCAACCACTACCTGGCGCCCGTGCGGGCCTGCCCCAGTCAGCT
EST: gi|161820970|gb|FC110474.1|FC110474
EST:     GTGCTGTCGGCGTTCGTGGAGTTTGGCTTCTACGACGCCACCGCCTACGACGACATCGCCGACTCCATCACCTACTGCAACCACTACCTGGCGCCCGTGCGGGCCTGCCCCAGCCAGCT
genomic: GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGACGACATCGCCGACTCCATCACCTACTGCAACCACTACCTGGCGCCCGTGCGGGCCTGCCCCAGTCAGCT
EST: gi|15701457|gb|BI725762.1|BI725762
EST:     GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGACGACATCGCCGACTCCATCACCTACTGCAACCACTACCTGGCGCCCGTGCGGGCCTGCCCCAGTCAGCT
genomic: GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGACGACATCGCCGACTCCATCACCTACTGCAACCACTACCTGGCGCCCGTGCGGGCCTGCCCCAGTCAGCT
EST: gi|9027949|gb|BE237989.1|BE237989
EST:     GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGACGACATCGCCGACTCCATCACCTACTGCAACCACTACCTGGCGCCCGTGCGGGCCTGCCCCAGTCAGCT
genomic: GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGACGACATCGCCGACTCCATCACCTACTGCAACCACTACCTGGCGCCCGTGCGGGCCTGCCCCAGTCAGCT
EST: gi|161798100|gb|FC082636.1|FC082636
EST:     GTGCTGTCGGCGTTCGTGGAGTTTGGCTTCTACGACGCCACCGCCTACGACGACATCGCCGACTCCATCACCTACTGCAACCACTACCTGGCGCCCGTGCGGGCCTGCCCCAGCCAGCT
genomic: GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGACGACATCGCCGACTCCATCACCTACTGCAACCACTACCTGGCGCCCGTGCGGGCCTGCCCCAGTCAGCT
EST: gi|22058245|gb|BQ812910.1|BQ812910
EST:     GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGACGACATCGCCGACTCCATCACCTACTGCAACCACTACCTGGCGCCCGTGCGGGCCTGCCCCAGTCAGCT
genomic: GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGACGACATCGCCGACTCCATCACCTACTGCAACCACTACCTGGCGCCCGTGCGGGCCTGCCCCAGTCAGCT
EST: gi|161798222|gb|FC083457.1|FC083457
EST:     GTGCTGTCGGCGTTCGTGGAGTTTGGCTTCTACGACGCCACCGCCTACGACGACATCGCCGACTCCATCACCTACTGCAACCACTACCTGGCGCCCGTGCGGGCCTGCCCCAGCCAGCT
genomic: GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGACGACATCGCCGACTCCATCACCTACTGCAACCACTACCTGGCGCCCGTGCGGGCCTGCCCCAGTCAGCT
EST: gi|161794466|gb|FC080782.1|FC080782
EST:     GTGCTGTCGGCGTTCGTGGAGTTTGGCTTCTACGACGCCACCGCCTACGACGACATCGCCGACTCCATCACCTACTGCAACCACTACCTGGCGCCCGTGCGGGCCTGCCCCAGCCAGCT
genomic: GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGACGACATCGCCGACTCCATCACCTACTGCAACCACTACCTGGCGCCCGTGCGGGCCTGCCCCAGTCAGCT
EST: gi|161802251|gb|FC091568.1|FC091568
EST:     GTGCTGTCGGCGTTCGTGGAGTTTGGCTTCTACGACGCCACCGCCTACGACGACATCGCCGACTCCATCACCTACTGCAACCACTACCTGGCGCCCGTGCGGGCCTGCCCCAGCCAGCT
genomic: GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGACGACATCGCCGACTCCATCACCTACTGCAACCACTACCTGGCGCCCGTGCGGGCCTGCCCCAGTCAGCT
EST: gi|161819437|gb|FC109409.1|FC109409
EST:     GTGCTGTCGGCGTTCGTGGAGTTTGGCTTCTACGACGCCACCGCCTACGACGACATCGCCGACTCCATCACCTACTGCAACCACTACCTGGCGCCCGTGCGGGCCTGCCCCAGCCAGCT
genomic: GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGACGACATCGCCGACTCCATCACCTACTGCAACCACTACCTGGCGCCCGTGCGGGCCTGCCCCAGTCAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accgcctgcctctccagccgcactttcaacgcccgcctcgccctcgcaatcgcagAGGCGCTGCTGCACGCCGCCAAGGGCCTGGAGGGCTCTCTGTCTGCGGACGAGGCCAAGGAGGTGGAAAAGTACCAGAAGCTGCTGGAGGACGCGGCGGG
                                        ccctcgc  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcgtgaatgccgcgtgcaccgccacctcgcacccaccacacacccaccgcctgcctctccagccgcactttcaacgcccgcctcgccctcgcaatcgcagAGGCGCTGCTGCACGCCGCCAAGGGCCTGGAGGGCTCTCTGTCTGCGGACGAGGCCAAGGAGGTGGAAAAGTACCAGAAGCTGCTGGAGGACGCGGCGGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- gtgaatg
- - - - - - cgtgcac
- - - - - - - - - - - - - - gcaccca
- - - - - - - - - - - - - - - - - -ccacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actttca