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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAGGTGATCAGCACCGCTGCCAGCTTGACTGGCAAGGCTGTGGCTGGTGCCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAGgtaagcgtgcattcagtgtacatgcacagcgatttgttgcggaatacatctgcacggtcttcaacgagacatttctttgctgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98373
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161820970|gb|FC110474.1|FC110474
EST:     CACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAG                         GCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
genomic: CACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAGgtaagcgtgc ... tttgctgcagGCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
EST: gi|10126082|gb|BE724786.1|BE724786
EST:     CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAA                         GCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGGTGGATGTCCCCTT
genomic: CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAGgtaagcgtgc ... tttgctgcagGCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGG-TGGATGTCCCCTT
EST: gi|10126081|gb|BE724785.1|BE724785
EST:     CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAA                         GCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
genomic: CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAGgtaagcgtgc ... tttgctgcagGCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
EST: gi|49460093|gb|BP088006.1|BP088006
EST:     GCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAG                         GCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
genomic: GCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAGgtaagcgtgc ... tttgctgcagGCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
EST: gi|49460221|gb|BP088134.1|BP088134
EST:     CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAG                         GCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
genomic: CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAGgtaagcgtgc ... tttgctgcagGCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
EST: gi|161798222|gb|FC083457.1|FC083457
EST:     CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAG                         GCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
genomic: CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAGgtaagcgtgc ... tttgctgcagGCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
EST: gi|10780855|gb|AV637535.1|AV637535
EST:     CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAG                         GCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
genomic: CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAGgtaagcgtgc ... tttgctgcagGCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
EST: gi|6545568|gb|AV391352.1|AV391352
EST:     CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAG                         GCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
genomic: CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAGgtaagcgtgc ... tttgctgcagGCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
EST: gi|15701185|gb|BI725490.1|BI725490
EST:     CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAG                         GCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTTGGATGTCCCCTT
genomic: CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAGgtaagcgtgc ... tttgctgcagGCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGT-GGATGTCCCCTT
EST: gi|10778502|gb|AV635182.1|AV635182
EST:     CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAG                         GCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
genomic: CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAGgtaagcgtgc ... tttgctgcagGCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
EST: gi|161800865|gb|FC084111.1|FC084111
EST:     CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAG                         GCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
genomic: CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAGgtaagcgtgc ... tttgctgcagGCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
EST: gi|10792910|gb|AV630276.1|AV630276
EST:     CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAG                         GCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
genomic: CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAGgtaagcgtgc ... tttgctgcagGCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
EST: gi|161812274|gb|FC096698.1|FC096698
EST:     CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAG                         GCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
genomic: CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAGgtaagcgtgc ... tttgctgcagGCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
EST: gi|14235308|gb|BG854124.1|BG854124
EST:     CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAG                         GCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
genomic: CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAGgtaagcgtgc ... tttgctgcagGCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
EST: gi|6546081|gb|AV391865.1|AV391865
EST:     CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAG                         GCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
genomic: CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAGgtaagcgtgc ... tttgctgcagGCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
EST: gi|8576812|gb|BE129449.1|BE129449
EST:     CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAG                         GCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
genomic: CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAGgtaagcgtgc ... tttgctgcagGCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
EST: gi|15692436|gb|BI716741.1|BI716741
EST:     CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAG                         GCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
genomic: CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAGgtaagcgtgc ... tttgctgcagGCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
EST: gi|49465269|gb|BP093182.1|BP093182
EST:     CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAG                         GCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
genomic: CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAGgtaagcgtgc ... tttgctgcagGCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
EST: gi|10770301|gb|AV621126.1|AV621126
EST:     CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAG                         GCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
genomic: CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAGgtaagcgtgc ... tttgctgcagGCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
EST: gi|15368725|gb|BI528151.1|BI528151
EST:     CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAG                         GCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
genomic: CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAGgtaagcgtgc ... tttgctgcagGCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
EST: gi|23366313|gb|BU654133.1|BU654133
EST:     CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAG                         GCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
genomic: CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAGgtaagcgtgc ... tttgctgcagGCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
EST: gi|10127769|gb|BE726473.1|BE726473
EST:     CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAG                         GCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
genomic: CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAGgtaagcgtgc ... tttgctgcagGCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
EST: gi|7687554|gb|AW758200.1|AW758200
EST:     CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAG                         GCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
genomic: CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAGgtaagcgtgc ... tttgctgcagGCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
EST: gi|6552098|gb|AV397882.1|AV397882
EST:     CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAG                         GCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
genomic: CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAGgtaagcgtgc ... tttgctgcagGCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
EST: gi|16437776|gb|BM002996.1|BM002996
EST:     CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAG                         GCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
genomic: CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAGgtaagcgtgc ... tttgctgcagGCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
EST: gi|16072958|gb|BI874954.1|BI874954
EST:     CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAG                         GCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
genomic: CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAGgtaagcgtgc ... tttgctgcagGCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
EST: gi|14239633|gb|BG858449.1|BG858449
EST:     CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAG                         GCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC
genomic: CCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAGgtaagcgtgc ... tttgctgcagGCGATTATCAGCGAGTCGATCGTGAAGGTGGACGAGGTGGATGTCCCCTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCAGGTGATCAGCACCGCTGCCAGCTTGACTGGCAAGGCTGTGGCTGGTGCCGCTACCTCTAGCACGATTAGGGACCTGGTCACCTCCTTCGCGGAGAAGgtaagcgtgcattcagtgtacatgcacagcgatttgttgcggaatacatctgcacggtcttcaacgagacatttctttgctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA