Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTGGCGCTCCCGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGGgtgagtcttgcatgctcgcagttttgttgcatgtgcaagcctttcggacgtaaataaagtacaacatacactgacgctgaatgcgggttctgcgggtgtcgggacgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98373
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10126082|gb|BE724786.1|BE724786
EST:     CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGG                         GTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
genomic: CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGGgtgagtcttg ... cgggacgcagGTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
EST: gi|10126081|gb|BE724785.1|BE724785
EST:     CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGG                         GTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
genomic: CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGGgtgagtcttg ... cgggacgcagGTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
EST: gi|49460221|gb|BP088134.1|BP088134
EST:     CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGG                         GTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
genomic: CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGGgtgagtcttg ... cgggacgcagGTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
EST: gi|22073050|gb|BQ822388.1|BQ822388
EST:     CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGG                         GTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
genomic: CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGGgtgagtcttg ... cgggacgcagGTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
EST: gi|10780855|gb|AV637535.1|AV637535
EST:     CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGG                         GTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
genomic: CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGGgtgagtcttg ... cgggacgcagGTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
EST: gi|6545568|gb|AV391352.1|AV391352
EST:     CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGG                         GTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
genomic: CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGGgtgagtcttg ... cgggacgcagGTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
EST: gi|49460814|gb|BP088727.1|BP088727
EST:     CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGG                         GTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
genomic: CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGGgtgagtcttg ... cgggacgcagGTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
EST: gi|15701185|gb|BI725490.1|BI725490
EST:     CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGG                         GTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
genomic: CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGGgtgagtcttg ... cgggacgcagGTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
EST: gi|10778502|gb|AV635182.1|AV635182
EST:     CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGG                         GTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
genomic: CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGGgtgagtcttg ... cgggacgcagGTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
EST: gi|161800865|gb|FC084111.1|FC084111
EST:     CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGG                         GTATCGTTGCCATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
genomic: CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGGgtgagtcttg ... cgggacgcagGTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
EST: gi|10792910|gb|AV630276.1|AV630276
EST:     CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGG                         GTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
genomic: CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGGgtgagtcttg ... cgggacgcagGTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
EST: gi|161812274|gb|FC096698.1|FC096698
EST:     CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGG                         GTATCGTTGCCATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
genomic: CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGGgtgagtcttg ... cgggacgcagGTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
EST: gi|14235308|gb|BG854124.1|BG854124
EST:     CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGG                         GTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
genomic: CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGGgtgagtcttg ... cgggacgcagGTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
EST: gi|6546081|gb|AV391865.1|AV391865
EST:     CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGG                         GTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
genomic: CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGGgtgagtcttg ... cgggacgcagGTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
EST: gi|8576812|gb|BE129449.1|BE129449
EST:     CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGG                         GTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
genomic: CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGGgtgagtcttg ... cgggacgcagGTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
EST: gi|15692436|gb|BI716741.1|BI716741
EST:     CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGG                         GTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
genomic: CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGGgtgagtcttg ... cgggacgcagGTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
EST: gi|49465269|gb|BP093182.1|BP093182
EST:     CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGG                         GTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
genomic: CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGGgtgagtcttg ... cgggacgcagGTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
EST: gi|10770301|gb|AV621126.1|AV621126
EST:     CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGG                         GTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
genomic: CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGGgtgagtcttg ... cgggacgcagGTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
EST: gi|15368725|gb|BI528151.1|BI528151
EST:     CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGG                         GTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
genomic: CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGGgtgagtcttg ... cgggacgcagGTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
EST: gi|23366313|gb|BU654133.1|BU654133
EST:     CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGG                         GTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
genomic: CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGGgtgagtcttg ... cgggacgcagGTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
EST: gi|10127769|gb|BE726473.1|BE726473
EST:     CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGG                         GTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
genomic: CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGGgtgagtcttg ... cgggacgcagGTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
EST: gi|7687554|gb|AW758200.1|AW758200
EST:     CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGG                         GTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
genomic: CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGGgtgagtcttg ... cgggacgcagGTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
EST: gi|6552098|gb|AV397882.1|AV397882
EST:     CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGG                         GTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
genomic: CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGGgtgagtcttg ... cgggacgcagGTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
EST: gi|16437776|gb|BM002996.1|BM002996
EST:     CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGTCGG                         GTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
genomic: CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGGgtgagtcttg ... cgggacgcagGTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
EST: gi|16072958|gb|BI874954.1|BI874954
EST:     CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGG                         GTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
genomic: CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGGgtgagtcttg ... cgggacgcagGTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
EST: gi|14239633|gb|BG858449.1|BG858449
EST:     CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGG                         GTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG
genomic: CGCTGGCAGCCATGACCACCCCACCACGCCCCTGAGCCCCATCATGCCGGgtgagtcttg ... cgggacgcagGTATCGTTGCTATTCCGCGCCAGGTGATCAGCACCGCTGCCAGCTTGACTG