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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCAACTACTTCGACAAGGACCTGTTCGCTGCCGTGGCCGCCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgtggggagaggggcggcgggggcagggttggtgggcggagcaggggaagggggggcagaggcctttgtgctcaagctcaacggagcggggcg...

Basic information

species Chlamydomonas reinhardtii
transcript EDO98373
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22058246|gb|BQ812911.1|BQ812911
EST:     CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG                         GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: gi|161820970|gb|FC110474.1|FC110474
EST:     CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG                         GTGCTGTCGGCGTTCGTGGAGTTTGGCTTCTACGACGCCACCGCCTACGAC
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: gi|15701457|gb|BI725762.1|BI725762
EST:     CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG                         GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: gi|9027949|gb|BE237989.1|BE237989
EST:     CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG                         GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: gi|161798100|gb|FC082636.1|FC082636
EST:     CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG                         GTGCTGTCGGCGTTCGTGGAGTTTGGCTTCTACGACGCCACCGCCTACGAC
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: gi|22058245|gb|BQ812910.1|BQ812910
EST:     CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG                         GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: gi|49460208|gb|BP088121.1|BP088121
EST:     CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG                         GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: gi|161798222|gb|FC083457.1|FC083457
EST:     CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG                         GTGCTGTCGGCGTTCGTGGAGTTTGGCTTCTACGACGCCACCGCCTACGAC
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: gi|161800865|gb|FC084111.1|FC084111
EST:     CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG                         GTGCTGTCGGCGTTCGTGGAGTTTGGCTTCTACGACGCCACCGCCTACGAC
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: gi|161812274|gb|FC096698.1|FC096698
EST:     CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG                         GTGCTGTCGGCGTTCGTGGAGTTTGGCTTCTACGACGCCACCGCCTACGAC
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: gi|10773499|gb|AV624322.1|AV624322
EST:     CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG                         GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: gi|14235308|gb|BG854124.1|BG854124
EST:     CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG                         GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: gi|8576812|gb|BE129449.1|BE129449
EST:     CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG                         GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: gi|15692436|gb|BI716741.1|BI716741
EST:     CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG                         GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGNCTACGAC
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: gi|161794466|gb|FC080782.1|FC080782
EST:     CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG                         GTGCTGTCGGCGTTCGTGGAGTTTGGCTTCTACGACGCCACCGCCTACGAC
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: gi|161802251|gb|FC091568.1|FC091568
EST:     CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG                         GTGCTGTCGGCGTTCGTGGAGTTTGGCTTCTACGACGCCACCGCCTACGAC
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: gi|23366313|gb|BU654133.1|BU654133
EST:     CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG                         GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: gi|16437776|gb|BM002996.1|BM002996
EST:     CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG                         GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGAC
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGAC
EST: gi|16072958|gb|BI874954.1|BI874954
EST:     CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG                         GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: gi|14239633|gb|BG858449.1|BG858449
EST:     CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG                         GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: gi|161819437|gb|FC109409.1|FC109409
EST:     CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG                         GTGCTGTCGGCGTTCGTGGAGTTTGGCTTCTACGACGCCACCGCCTACGAC
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTCAACTACTTCGACAAGGACCTGTTCGCTGCCGTGGCCGCCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgtggggagaggggcggcgggggcagggttggtgggcggagcaggggaagggggggcagaggcctttgtgctcaagctcaacggagcggggcg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctttgt