1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttgctgacggtcacctgggactgggggcaggcgccgcggagtgaggccaccgctgagcacactgccaatacacaaccgcacctcttgtctcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGACGACATCGCCGACTCCATCACCTACTGCAACCACTACCTGGCGCCCGTGC
species | Chlamydomonas reinhardtii |
transcript | EDO98373 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGACEST: gi|161820970|gb|FC110474.1|FC110474
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG GTGCTGTCGGCGTTCGTGGAGTTTGGCTTCTACGACGCCACCGCCTACGACEST: gi|15701457|gb|BI725762.1|BI725762
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGACEST: gi|9027949|gb|BE237989.1|BE237989
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGACEST: gi|161798100|gb|FC082636.1|FC082636
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG GTGCTGTCGGCGTTCGTGGAGTTTGGCTTCTACGACGCCACCGCCTACGACEST: gi|22058245|gb|BQ812910.1|BQ812910
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGACEST: gi|49460208|gb|BP088121.1|BP088121
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGACEST: gi|161798222|gb|FC083457.1|FC083457
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG GTGCTGTCGGCGTTCGTGGAGTTTGGCTTCTACGACGCCACCGCCTACGACEST: gi|161800865|gb|FC084111.1|FC084111
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG GTGCTGTCGGCGTTCGTGGAGTTTGGCTTCTACGACGCCACCGCCTACGACEST: gi|161812274|gb|FC096698.1|FC096698
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG GTGCTGTCGGCGTTCGTGGAGTTTGGCTTCTACGACGCCACCGCCTACGACEST: gi|10773499|gb|AV624322.1|AV624322
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGACEST: gi|14235308|gb|BG854124.1|BG854124
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGACEST: gi|8576812|gb|BE129449.1|BE129449
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGACEST: gi|15692436|gb|BI716741.1|BI716741
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGNCTACGACEST: gi|161794466|gb|FC080782.1|FC080782
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG GTGCTGTCGGCGTTCGTGGAGTTTGGCTTCTACGACGCCACCGCCTACGACEST: gi|161802251|gb|FC091568.1|FC091568
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG GTGCTGTCGGCGTTCGTGGAGTTTGGCTTCTACGACGCCACCGCCTACGACEST: gi|23366313|gb|BU654133.1|BU654133
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGACEST: gi|16437776|gb|BM002996.1|BM002996
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACEST: gi|16072958|gb|BI874954.1|BI874954
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGAC
EST: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGACEST: gi|14239633|gb|BG858449.1|BG858449
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG GTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGACEST: gi|161819437|gb|FC109409.1|FC109409
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
EST: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAG GTGCTGTCGGCGTTCGTGGAGTTTGGCTTCTACGACGCCACCGCCTACGAC
genomic: CCAACATCAGCGCCAACTTCACCAAGTACGAGACGGAGCAGCTGCTGCAGgtgggcgcgt ... tcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGAC
ggccaccgctgagcacactgccaatacacaaccgcacctcttgtctcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGACGACATCGCCGACTCCATCACCTACTGCAACCACTACCTGGCGCCCGTGC
ccgcacctcttgtctc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgctgacggtcacctgggactgggggcaggcgccgcggagtgaggccaccgctgagcacactgccaatacacaaccgcacctcttgtctcctctccagGTGCTGTCGGCGTTCGTGGAGTTCGGCTTCTACGACGCCACCGCCTACGACGACATCGCCGACTCCATCACCTACTGCAACCACTACCTGGCGCCCGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - agcacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atacaca