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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTGTGTCCGGCCTTTCGGGACATCCTCTTCCGGAGCATTTTCAGAAGCCAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAGgtacaggttgcgcaatgtattcggcgcaagctgaggccacgcccgagagcacgccgctacaatcacgctcgccgctgcgttctgtaccgcttgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDO98373
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10126082|gb|BE724786.1|BE724786
EST:     CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAG                         GCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
genomic: CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAGgtacaggttg ... ccgcttgcagGCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
EST: gi|10126081|gb|BE724785.1|BE724785
EST:     CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAG                         GCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
genomic: CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAGgtacaggttg ... ccgcttgcagGCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
EST: gi|49460221|gb|BP088134.1|BP088134
EST:     CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAG                         GCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
genomic: CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAGgtacaggttg ... ccgcttgcagGCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
EST: gi|22073050|gb|BQ822388.1|BQ822388
EST:     CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAG                         GCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
genomic: CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAGgtacaggttg ... ccgcttgcagGCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
EST: gi|10780855|gb|AV637535.1|AV637535
EST:     CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAG                         GCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
genomic: CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAGgtacaggttg ... ccgcttgcagGCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
EST: gi|6545568|gb|AV391352.1|AV391352
EST:     CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAG                         GCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
genomic: CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAGgtacaggttg ... ccgcttgcagGCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
EST: gi|49460814|gb|BP088727.1|BP088727
EST:     CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAG                         GCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
genomic: CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAGgtacaggttg ... ccgcttgcagGCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
EST: gi|15701185|gb|BI725490.1|BI725490
EST:     CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAG                         GCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
genomic: CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAGgtacaggttg ... ccgcttgcagGCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
EST: gi|10778502|gb|AV635182.1|AV635182
EST:     CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAG                         GCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
genomic: CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAGgtacaggttg ... ccgcttgcagGCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
EST: gi|161800865|gb|FC084111.1|FC084111
EST:     CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAG                         GCCTCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
genomic: CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAGgtacaggttg ... ccgcttgcagGCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
EST: gi|10792910|gb|AV630276.1|AV630276
EST:     CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAG                         GCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
genomic: CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAGgtacaggttg ... ccgcttgcagGCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
EST: gi|161812274|gb|FC096698.1|FC096698
EST:     CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAG                         GCCTCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
genomic: CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAGgtacaggttg ... ccgcttgcagGCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
EST: gi|6546081|gb|AV391865.1|AV391865
EST:     CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAG                         GCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
genomic: CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAGgtacaggttg ... ccgcttgcagGCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
EST: gi|15692436|gb|BI716741.1|BI716741
EST:     CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAG                         GCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
genomic: CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAGgtacaggttg ... ccgcttgcagGCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
EST: gi|49465269|gb|BP093182.1|BP093182
EST:     CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAG                         GCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
genomic: CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAGgtacaggttg ... ccgcttgcagGCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
EST: gi|10770301|gb|AV621126.1|AV621126
EST:     CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAG                         GCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
genomic: CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAGgtacaggttg ... ccgcttgcagGCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
EST: gi|15368725|gb|BI528151.1|BI528151
EST:     CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAG                         GCCCCCAGCAGACCTGTCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTT
genomic: CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAGgtacaggttg ... ccgcttgcagGCCCCCAGCAGACCTG-CGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTT
EST: gi|10127769|gb|BE726473.1|BE726473
EST:     CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAG                         GCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
genomic: CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAGgtacaggttg ... ccgcttgcagGCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
EST: gi|7687554|gb|AW758200.1|AW758200
EST:     CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAG                         GCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
genomic: CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAGgtacaggttg ... ccgcttgcagGCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
EST: gi|16437776|gb|BM002996.1|BM002996
EST:     CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAG                         GCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
genomic: CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAGgtacaggttg ... ccgcttgcagGCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
EST: gi|16072958|gb|BI874954.1|BI874954
EST:     CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAG                         GCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
genomic: CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAGgtacaggttg ... ccgcttgcagGCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
EST: gi|14239633|gb|BG858449.1|BG858449
EST:     CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAG                         GCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG
genomic: CAACATGCTTCGCAAGGGCGCTCAGGCCGTGCTTCAGGCGGAGCGTGCAGgtacaggttg ... ccgcttgcagGCCCCCAGCAGACCTGCGCCGCTGCGCAGACTGCTTTCACGCGTCAGTTTG