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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCCAAAGTTGTAGATGACATTCTTGTCGAACAAGgtttgttttgtttctttctttctttctttctttcatcatccgttttggatcgctctgatccggtcttaatgtgttgtattttggtttctaacttcattgagtgggttgttcag

Basic information

species Arabidopsis thaliana
transcript AT4G30210.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164152353|gb|ES205067.1|ES205067
EST:     GTTGCCAAAGTTGTAGATGACATTCTTGTCGAACAAG                         GTGCACAGCGTCTTGTACAAGTTGGTCTTGGAGATGA
genomic: GTTGCCAAAGTTGTAGATGACATTCTTGTCGAACAAGgtttgttttg ... ggttgttcagGTGCACAGCGTCTTGTACAAGTTGGTCTTGGAGATGA
EST: gi|124884561|gb|EH963463.1|EH963463
EST:     TTGTAGATGACATTCTTGTCGAACAAG                         GTGCACAGCGTCTTGTACAAGTTGGTCTTGGAGATGATGACCAGTGTATTG
genomic: TTGTAGATGACATTCTTGTCGAACAAGgtttgttttg ... ggttgttcagGTGCACAGCGTCTTGTACAAGTTGGTCTTGGAGATGATGACCAGTGTATTG
EST: gi|116435705|gb|EG478297.1|EG478297
EST:     GTTGCCAAAGTTGTAGATGACATTCTTGTCGAACAAG                         GTGCACAGCGTCTTGTACAAGTTGGTCTTGGAGATGATGACCAGTGTATTG
genomic: GTTGCCAAAGTTGTAGATGACATTCTTGTCGAACAAGgtttgttttg ... ggttgttcagGTGCACAGCGTCTTGTACAAGTTGGTCTTGGAGATGATGACCAGTGTATTG
EST: gi|86044359|gb|DR340114.1|DR340114
EST:     TTAATAAGGTTGCCAAAGTTGTAGATGACATTCTTGTCGAACAAG                         GTGCACAGCGTCTTGTACAAGTTGGTCTTGGAGATGATGACCAGTGTATTG
genomic: TTAATAAGGTTGCCAAAGTTGTAGATGACATTCTTGTCGAACAAGgtttgttttg ... ggttgttcagGTGCACAGCGTCTTGTACAAGTTGGTCTTGGAGATGATGACCAGTGTATTG