1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
CCAGCGATTTGTTGAGAGTGGTGCTCTCGCAGAGCTAAGTGTCGCCTTCTCTCGTGAAGGACCCACCAAAGAATACGTACAGCACAAGATGATGGACAAGgtatgagcttatagaaacccaaaactcagatcttcatatagattcaaattcagattcttgagctgacaatctttctgcaatgcag
species | Arabidopsis thaliana |
transcript | AT4G30210.2 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: CTCGTGAAGGACCCACCAAAGAATACGTACAGCACAAGATGATGGACAAG GCTTCTGATATCTGGAATATGATCTCTCAAGGAGEST: gi|124841774|gb|EH926211.1|EH926211
genomic: CTCGTGAAGGACCCACCAAAGAATACGTACAGCACAAGATGATGGACAAGgtatgagctt ... tgcaatgcagGCTTCTGATATCTGGAATATGATCTCTCAAGGAG
EST: AGATGATGGACAAG GCTTCTGATATCTGGAATATGATCTCTCAAGGAGCTTATTTATATGTTTGTEST: gi|116436419|gb|EG479011.1|EG479011
genomic: AGATGATGGACAAGgtatgagctt ... tgcaatgcagGCTTCTGATATCTGGAATATGATCTCTCAAGGAGCTTATTTATATGTTTGT
EST: CTCGTGAAGGACCCACCAAAGAATACGTACAGCACAAGATGATGGACAAG GCTTCTGATATCTGGAATATGATCTCTCAAGGAGCTTATTTATATGTTTGT
genomic: CTCGTGAAGGACCCACCAAAGAATACGTACAGCACAAGATGATGGACAAGgtatgagctt ... tgcaatgcagGCTTCTGATATCTGGAATATGATCTCTCAAGGAGCTTATTTATATGTTTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAGCGATTTGTTGAGAGTGGTGCTCTCGCAGAGCTAAGTGTCGCCTTCTCTCGTGAAGGACCCACCAAAGAATACGTACAGCACAAGATGATGGACAAGgtatgagcttatagaaacccaaaactcagatcttcatatagattcaaattcagattcttgagctgacaatctttctgcaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA