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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCACACCAATCAGCAGCTCACTGCCTCCTCCCTTCCCACCTTGCAACTTGAGAACAGCGCTTACACGATATGCATGTCTTTTGAGTTCTCCAAAGAAGgttggttggattcatttaccattagactggttataatcagttttgtttctcttcatagagattcaaactcaattattttcatgtttattttcttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G30210.2
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124999203|gb|EL071472.1|EL071472
EST:     ACGATATGCATGTCTTTTGAGTTCTCCAAAGAAG                         TCTGCTTTAGTTGCGTTGGCTGCTCATGCNTCTGATCCTACCGAAGCAGAA
genomic: ACGATATGCATGTCTTTTGAGTTCTCCAAAGAAGgttggttgga ... tttcttgcagTCTGCTTTAGTTGCGTTGGCTGCTCATGCATCTGATCCTACCGAAGCAGAA
EST: gi|86044360|gb|DR340115.1|DR340115
EST:     TGAGAACAGCGCTTACACGATATGCATGTCTTTTGAGTTCTCCAAAGAAG                         TCTGCTTTAGTTGCGTTGGCTGCTCATGCATCTGATCCTACCGAAGCAGAA
genomic: TGAGAACAGCGCTTACACGATATGCATGTCTTTTGAGTTCTCCAAAGAAGgttggttgga ... tttcttgcagTCTGCTTTAGTTGCGTTGGCTGCTCATGCATCTGATCCTACCGAAGCAGAA
EST: gi|86044357|gb|DR340112.1|DR340112
EST:     TCTTTTGAGTTCTCCAAAGAAG                         TCTGCTTTAGTTGCGTTGGCTGCTCATGCATCTGATCCTACCGAAGCAGAA
genomic: TCTTTTGAGTTCTCCAAAGAAGgttggttgga ... tttcttgcagTCTGCTTTAGTTGCGTTGGCTGCTCATGCATCTGATCCTACCGAAGCAGAA
EST: gi|164019604|gb|ES114998.1|ES114998
EST:     TGAGAACAGCGCTTACACGATATGCATGTCTTTTGAGTTCTCCAAAGAAG                         TCTGCTTTAGT
genomic: TGAGAACAGCGCTTACACGATATGCATGTCTTTTGAGTTCTCCAAAGAAGgttggttgga ... tttcttgcagTCTGCTTTAGT
EST: gi|86044356|gb|DR340111.1|DR340111
EST:     TGAGAACAGCGCTTACACGATATGCATGTCTTTTGAGTTCTCCAAAGAAG                         TCTGCTTTAGTTGCGTTGGCTGCTCATGCATCTGATCCTACCGAAGCAGAA
genomic: TGAGAACAGCGCTTACACGATATGCATGTCTTTTGAGTTCTCCAAAGAAGgttggttgga ... tttcttgcagTCTGCTTTAGTTGCGTTGGCTGCTCATGCATCTGATCCTACCGAAGCAGAA
EST: gi|86044358|gb|DR340113.1|DR340113
EST:     TGAGAACAGCGCTTACACGATATGCATGTCTTTTGAGTTCTCCAAAGAAG                         TCTGCTTTAGTTGCGTTGGCTGCTCATGCATCTGATCCTACCGAAGCAGAA
genomic: TGAGAACAGCGCTTACACGATATGCATGTCTTTTGAGTTCTCCAAAGAAGgttggttgga ... tttcttgcagTCTGCTTTAGTTGCGTTGGCTGCTCATGCATCTGATCCTACCGAAGCAGAA
EST: gi|116436419|gb|EG479011.1|EG479011
EST:     TGAGAACAGCGCTTACACGATATGCATGTCTTTTGAGTTCTCCAAAGAAG                         TCTGCTTTAGTTGCGTTGGCTGCTCATGCATCTGATCCTACCGAAGCAGAA
genomic: TGAGAACAGCGCTTACACGATATGCATGTCTTTTGAGTTCTCCAAAGAAGgttggttgga ... tttcttgcagTCTGCTTTAGTTGCGTTGGCTGCTCATGCATCTGATCCTACCGAAGCAGAA
EST: gi|86044359|gb|DR340114.1|DR340114
EST:     TGAGAACAGCGCTTACACGATATGCATGTCTTTTGAGTTCTCCAAAGAAG                         TCTGCTTTAGTTGCGTTGGCTGCTCATGCATCTGATCC
genomic: TGAGAACAGCGCTTACACGATATGCATGTCTTTTGAGTTCTCCAAAGAAGgttggttgga ... tttcttgcagTCTGCTTTAGTTGCGTTGGCTGCTCATGCATCTGATCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGGCACACCAATCAGCAGCTCACTGCCTCCTCCCTTCCCACCTTGCAACTTGAGAACAGCGCTTACACGATATGCATGTCTTTTGAGTTCTCCAAAGAAGgttggttggattcatttaccattagactggttataatcagttttgtttctcttcatagagattcaaactcaattattttcatgtttattttcttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG