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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCCGAGTTTCCTTCAGCCAAGCCACCACTTGGTGTCTTCTTCGCTGGAGTTGCTCCAAGGTTGCAGCCTAGGTTCTATTCGATATCATCATCGCCCAAgtgagtaccttcattgtcttggtctttttgtcttcaagttgttcgcttgagacttatattgtgtttttagtgtattgagcattgtcccgtttacttgtatag

Basic information

species Arabidopsis thaliana
transcript AT4G30210.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G30210.1 (Arabidopsis thaliana), 5'ss of exon 12
lower sequence: Vv11s0052g00880.t01 (Vitis vinifera), 5'ss of exon 12
TGGCCGAGTTTCCTTCAGCCAAGCCACCACTTGGTGTCTTCTTCGCTGGAGTTGCTCCAAGGTTGCAGCCTAGGTTCTATTCGATATCATCATCGCCCAAgtgagtaccttcattgtcttggtctttttgtcttcaagttgttcgcttgagacttatattgtgtttttagtgtattgagc-attgtcccgtttacttgtatag
|||| || || || ||||||||||| |||||||| || ||||| || | |||||||||| | |||||||| || |  ||||| |||||||| || || |||||||||  |   |  | |      ||   ||      || | |  || | || | ||   |||     ||||| |   | ||  | ||||  |  ||||   
TGGCTGAATTCCCATCAGCCAAGCCTCCACTTGGAGTTTTCTTTGCAGCAGTTGCTCCACGCTTGCAGCCCAGATATTATTCCATATCATCTTCCCCAAAgtgagtatttctgtcctttcaaatattagatcgcatctttttgctgttaatacctctag-atgtcaactgtgtaatacactatgattccgtaaaactgtaa--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86044360|gb|DR340115.1|DR340115
EST:     GTTGCTCCAAGGTTGCAGCCTAGGTTCTATTCGATATCATCATCGCCCAA                         GATTGCTGAAACTAGAATTCACGTCACATGTGCACTGGTTTATGAGAAAAT
genomic: GTTGCTCCAAGGTTGCAGCCTAGGTTCTATTCGATATCATCATCGCCCAAgtgagtacct ... acttgtatagGATTGCTGAAACTAGAATTCACGTCACATGTGCACTGGTTTATGAGAAAAT
EST: gi|86044357|gb|DR340112.1|DR340112
EST:     GTTGCTCCAAGGTTGCAGCCTAGGTTCTATTCGATATCATCATCGCCCAA                         GATTGCTGAAACTAGAATTCACGTCACATGTGCACTGGTTTATGAGAAAAT
genomic: GTTGCTCCAAGGTTGCAGCCTAGGTTCTATTCGATATCATCATCGCCCAAgtgagtacct ... acttgtatagGATTGCTGAAACTAGAATTCACGTCACATGTGCACTGGTTTATGAGAAAAT
EST: gi|86044356|gb|DR340111.1|DR340111
EST:     GTTGCTCCAAGGTTGCAGCCTAGNNNCTATTCGATATCATCATCGCCCAA                         GATTGCTGAAACTAGAATTCACGTCACATGTGCACTGGTTTATGAGAAAAT
genomic: GTTGCTCCAAGGTTGCAGCCTAGGTTCTATTCGATATCATCATCGCCCAAgtgagtacct ... acttgtatagGATTGCTGAAACTAGAATTCACGTCACATGTGCACTGGTTTATGAGAAAAT
EST: gi|86044358|gb|DR340113.1|DR340113
EST:     GTTGCTCCAAGGTTGCAGCCTAGGTTCTATTCGATATCATCATCGCCCAA                         GATTGCTGAAACTAGAATTCACGTCACATGTGCACTGGTTTATGAAAAAAT
genomic: GTTGCTCCAAGGTTGCAGCCTAGGTTCTATTCGATATCATCATCGCCCAAgtgagtacct ... acttgtatagGATTGCTGAAACTAGAATTCACGTCACATGTGCACTGGTTTATGAGAAAAT
EST: gi|116436419|gb|EG479011.1|EG479011
EST:     GTTGCTCCAAGGTTGCAGCCTAGGTTCTATTCGATATCATCATCGCCCAA                         GATTGCTGAAACTAGAATTCACGTCACATGTGCACTGGTTTATGAGAAAAT
genomic: GTTGCTCCAAGGTTGCAGCCTAGGTTCTATTCGATATCATCATCGCCCAAgtgagtacct ... acttgtatagGATTGCTGAAACTAGAATTCACGTCACATGTGCACTGGTTTATGAGAAAAT