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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCATTCAGAGGATTCCTTCAGGAAAGACTAGCGTTGGTAGAATCTGGTGTTGAACTTGGGCCATCAGTTTTGTTCTTTGGATGCAGAAACCGTAGAATGgtaataaagccattactcaaaactcaaacctttcattggttttgtccagtttctaatcatatcttctcatatatgtag

Basic information

species Arabidopsis thaliana
transcript AT4G30210.2
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G30210.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA13G00990.1 (Glycine max), 5'ss of exon 15
TCCATTCAGAGGATTCCTTCAGGAAAGACTAGCGTTGGTAGAATCTGGTGTTGAACTTGGGCCATCAGTTTTGTTCTTTGGATGCAGAAACCGTAGAATGgtaataaagccattactca---aaactcaaa---cctttcattg------gttttgt---ccagtttctaatcatatcttctcatatatgtag---------------------
                      |||||| ||||  ||  || |   || | ||||||||| || |||||||| |||||||||||||| ||||||  |||||| |   | | ||    ||   |   | |      ||||   ||      | ||| |     | ||   | | |  ||  || |   || |                       
----------------------GAAAGATTAGCTCTGAAAGGAGGGGGAGCTGAACTTGGCCCTTCAGTTTTATTCTTTGGATGCAGGAACCGTCAAATGgtgagttatctatcctccatgtaggtttatgagttctttttctgaaaagagatttatgagttaattataatttaggtcggcttaccaatattattttaataatttttattaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86044357|gb|DR340112.1|DR340112
EST:     TTGAACTTGGGCCATCAGTTTTGTTCTTTGGATGCAGAAACCGTAGAATG                         GATTTCATCTACGAGGAAGAGCTCCAGCGATTTTGGTGAGAGTGGTGCTCT
genomic: TTGAACTTGGGCCATCAGTTTTGTTCTTTGGATGCAGAAACCGTAGAATGgtaataaagc ... atatatgtagGATTTCATCTACGAGGAAGAGCTCCAGCGATTT-GTTGAGAGTGGTGCTCT
EST: gi|116436419|gb|EG479011.1|EG479011
EST:     TTGAACTTGGGCCATCAGTTTTGTTCTTTGGATGCAGAAACCGTAGAATG                         GATTTCATCTACGAGGAAGAGCTCCAGCGATTTGTTGAGAGTGGTGCTCTC
genomic: TTGAACTTGGGCCATCAGTTTTGTTCTTTGGATGCAGAAACCGTAGAATGgtaataaagc ... atatatgtagGATTTCATCTACGAGGAAGAGCTCCAGCGATTTGTTGAGAGTGGTGCTCTC