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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttataaatgaaatctttattccccttttcttaatggttttgctcttgtcactattatggtctccttccaattactttggaccgagctaatatgcagatttgttttgtaaattttgggttgcagGTTGCCAAAGTTGTAGATGACATTCTTGTCGAACAAG

Basic information

species Arabidopsis thaliana
transcript AT4G30210.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164152353|gb|ES205067.1|ES205067
EST:     CAATATGAGCATTTTAATAAG                         GTTGCCAAAGTTGTAGATGACATTCTTGTCGAACAAG
genomic: CAATATGAGCATTTTAATAAGgtttataaat ... tgggttgcagGTTGCCAAAGTTGTAGATGACATTCTTGTCGAACAAG
EST: gi|116435705|gb|EG478297.1|EG478297
EST:     AGTATGGAGTGTTTGGATTAGGAAACAGACAATATGAGCATTTTAATAAG                         GTTGCCAAAGTTGTAGATGACATTCTTGTCGAACAAG
genomic: AGTATGGAGTGTTTGGATTAGGAAACAGACAATATGAGCATTTTAATAAGgtttataaat ... tgggttgcagGTTGCCAAAGTTGTAGATGACATTCTTGTCGAACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattactttggaccgagctaatatgcagatttgttttgtaaattttgggttgcagGTTGCCAAAGTTGTAGATGACATTCTTGTCGAACAAG
               agctaat  putative branch site (score: 3)
                            atttgttttgtaaatt  TA-rich tract