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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaccttcattgtcttggtctttttgtcttcaagttgttcgcttgagacttatattgtgtttttagtgtattgagcattgtcccgtttacttgtatagGATTGCTGAAACTAGAATTCACGTCACATGTGCACTGGTTTATGAGAAAATGCCAACTGGCAGGATTCATAAGGGAGTGTGTTCCACTTGGATGAAG

Basic information

species Arabidopsis thaliana
transcript AT4G30210.2
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G30210.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA13G00990.1 (Glycine max), 3'ss of exon 12
gtgagtaccttcattgtcttggtctttttgtcttcaagttgttcgcttgagacttatattgtgtttttagtgtattgagcattgtcccgtttacttgtatagGATTGCTGAAACTAGAATTCACGTCACATGTGCACTGGTTTATGAGAAAATGCCAACTGGCAGGATTCATAAGGGAGTGTGTTCCACTTGGATGAAG
    ||  | |  |  | ||| |   ||  || | |   ||        |   |||| || |  |  |      |||    || | | ||     |  | || || |    ||  |||||||| || || |||||| | ||  |||| |||||||| ||||| |||||||| |||||||||||||| || |||||||||
aaatgtggcattgtgat-ttgtttacttcttcctaagtctgcatatcataagtttatgttcttgtacttacaatttggctgtt-tgctgtaattgttaacagAATGGTGCCAAACAGAATTCATGTTACCTGTGCATTAGTACATGATAAAATGCCCACTGGAAGGATTCACAAGGGAGTGTGTTCAACATGGATGAAG

upper sequence: AT4G30210.1 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA17G07050.2 (Glycine max), 3'ss of exon 12
----gtgagtaccttcattgtcttggtctttttgtcttcaagttgttcgcttgagacttatattgt-gtttttagtgtattgagcattgtcccgtttacttgtatagGATTGCTGAAACTAGAATTCACGTCACATGTGCACTGGTTTATGAGAAAATGCCAACTGGCAGGATTCATAAGGGAGTGTGTTCCACTTGGATGAAG
    |||| |    |  |||| |   ||||  ||  |     |   ||   | ||  |||| || | ||  |||  || | |    |||      ||  |   | |    |||  ||   |||||||| || || |||||| | ||  ||||||||||||| || || |||||||| || ||||||||||| || |||||||||
cattgtgattgtggt--ttgtttacatcttcctgagtctgcata--tcatataag-tttatgttcttgtacttacagtttggctgtttgctgtaattgttaacagAATGGTGCCAAA--CAGAATTCATGTTACCTGTGCATTAGTACATGAGAAAATGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86044360|gb|DR340115.1|DR340115
EST:     GTTGCTCCAAGGTTGCAGCCTAGGTTCTATTCGATATCATCATCGCCCAA                         GATTGCTGAAACTAGAATTCACGTCACATGTGCACTGGTTTATGAGAAAAT
genomic: GTTGCTCCAAGGTTGCAGCCTAGGTTCTATTCGATATCATCATCGCCCAAgtgagtacct ... acttgtatagGATTGCTGAAACTAGAATTCACGTCACATGTGCACTGGTTTATGAGAAAAT
EST: gi|86044357|gb|DR340112.1|DR340112
EST:     GTTGCTCCAAGGTTGCAGCCTAGGTTCTATTCGATATCATCATCGCCCAA                         GATTGCTGAAACTAGAATTCACGTCACATGTGCACTGGTTTATGAGAAAAT
genomic: GTTGCTCCAAGGTTGCAGCCTAGGTTCTATTCGATATCATCATCGCCCAAgtgagtacct ... acttgtatagGATTGCTGAAACTAGAATTCACGTCACATGTGCACTGGTTTATGAGAAAAT
EST: gi|86044356|gb|DR340111.1|DR340111
EST:     GTTGCTCCAAGGTTGCAGCCTAGNNNCTATTCGATATCATCATCGCCCAA                         GATTGCTGAAACTAGAATTCACGTCACATGTGCACTGGTTTATGAGAAAAT
genomic: GTTGCTCCAAGGTTGCAGCCTAGGTTCTATTCGATATCATCATCGCCCAAgtgagtacct ... acttgtatagGATTGCTGAAACTAGAATTCACGTCACATGTGCACTGGTTTATGAGAAAAT
EST: gi|86044358|gb|DR340113.1|DR340113
EST:     GTTGCTCCAAGGTTGCAGCCTAGGTTCTATTCGATATCATCATCGCCCAA                         GATTGCTGAAACTAGAATTCACGTCACATGTGCACTGGTTTATGAAAAAAT
genomic: GTTGCTCCAAGGTTGCAGCCTAGGTTCTATTCGATATCATCATCGCCCAAgtgagtacct ... acttgtatagGATTGCTGAAACTAGAATTCACGTCACATGTGCACTGGTTTATGAGAAAAT
EST: gi|116436419|gb|EG479011.1|EG479011
EST:     GTTGCTCCAAGGTTGCAGCCTAGGTTCTATTCGATATCATCATCGCCCAA                         GATTGCTGAAACTAGAATTCACGTCACATGTGCACTGGTTTATGAGAAAAT
genomic: GTTGCTCCAAGGTTGCAGCCTAGGTTCTATTCGATATCATCATCGCCCAAgtgagtacct ... acttgtatagGATTGCTGAAACTAGAATTCACGTCACATGTGCACTGGTTTATGAGAAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagacttatattgtgtttttagtgtattgagcattgtcccgtttacttgtatagGATTGCTGAAACTAGAATTCACGTCACATGTGCACTGGTTTATGAGAAAATGCCAACTGGCAGGATTCATAAGGGAGTGTGTTCCACTTGGATGAAG
                                          tttactt  CT-rich tract
      ttatattgtgttttta  TA-rich tract