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...aactactaataaaatcgtagagaacaaatattatctgattactattgattaatcctctgtttacttatgactaatcctctgttttctttgggcggattagATGACACATGATGATGTGTATCTCTCCTTCTTGCCCTTGGCTCATATTCTTGACCGTATGAACGAGGAATACTTCTTTCGCAAAGGCGCTTCCGTCGGCT
species | Arabidopsis thaliana |
transcript | AT2G47240.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CGACTTTTGTTGTTGGGATGGATCTCTATATGGACCAGTTTGAAGATAAG ATGACACATGATGATGTGTATCTCTCCTTCTTGCCGTTGGCTCATATTCTTEST: gi|86058770|gb|DR354527.1|DR354527
genomic: CGACTTTTGTTGTTGGGATGGATCTCTATATGGACCAGTTTGAAGATAAGgtaacccata ... ggcggattagATGACACATGATGATGTGTATCTCTCCTTCTTGCCCTTGGCTCATATTCTT
EST: CGACTTTTGTTGTTGGGATGGATCTCTATATGGACCAGTTTGAAGATAAG ATGACACATGATGATGTGTATCTCTCCTTCTTGCCGTTGGCTCATATTCTT
genomic: CGACTTTTGTTGTTGGGATGGATCTCTATATGGACCAGTTTGAAGATAAGgtaacccata ... ggcggattagATGACACATGATGATGTGTATCTCTCCTTCTTGCCCTTGGCTCATATTCTT
tgattaatcctctgtttacttatgactaatcctctgttttctttgggcggattagATGACACATGATGATGTGTATCTCTCCTTCTTGCCCTTGGCTCATATTCTTGACCGTATGAACGAGGAATACTTCTTTCGCAAAGGCGCTTCCGTCGGCT
gactaat putative branch site (score: 2)
tttacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactactaataaaatcgtagagaacaaatattatctgattactattgattaatcctctgtttacttatgactaatcctctgttttctttgggcggattagATGACACATGATGATGTGTATCTCTCCTTCTTGCCCTTGGCTCATATTCTTGACCGTATGAACGAGGAATACTTCTTTCGCAAAGGCGCTTCCGTCGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG