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gtgagtttcttgaatttttcttattgttacttaacaaaaagaagagaaaatatttatgggttaatacgtatatttgtacggatcggtttagGTTGGACCATATATGTGGAAAACGTACAAGGAAGTATACGAAGAAGTTTTGCAGATTGGCTCTGCACTACGAGCCGCCGGAGCTGAACCT
species | Arabidopsis thaliana |
transcript | AT2G47240.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AATTCCCTGACAATAATATGCTTGGATGGCGTCGAATTGTTGATGAGAAG GTTGGACCATATATGTGGAAAACGTACAAGGAAGTATACGAAGAAGTTTTGEST: gi|124788662|gb|EH878341.1|EH878341
genomic: AATTCCCTGACAATAATATGCTTGGATGGCGTCGAATTGTTGATGAGAAGgtgagtttct ... atcggtttagGTTGGACCATATATGTGGAAAACGTACAAGGAAGTATACGAAGAAGTTTTG
EST: AATTCCCTGACAATAATATGCTTGGATGGCGTCGAATTGTTGATGAGAAG GTTGGACCATATATGTGGAAAACGTACAAGGAAGTATACGAAGAAGTTTTGEST: gi|125165055|gb|EL191512.1|EL191512
genomic: AATTCCCTGACAATAATATGCTTGGATGGCGTCGAATTGTTGATGAGAAGgtgagtttct ... atcggtttagGTTGGACCATATATGTGGAAAACGTACAAGGAAGTATACGAAGAAGTTTTG
EST: GGATGGCGTCGAATTGTTGATGAGAAG GTTGGACCATATATGTGGAAAACGTACAAGGAAGTATACGAAGAAGTTTTG
genomic: GGATGGCGTCGAATTGTTGATGAGAAGgtgagtttct ... atcggtttagGTTGGACCATATATGTGGAAAACGTACAAGGAAGTATACGAAGAAGTTTTG
aaaagaagagaaaatatttatgggttaatacgtatatttgtacggatcggtttagGTTGGACCATATATGTGGAAAACGTACAAGGAAGTATACGAAGAAGTTTTGCAGATTGGCTCTGCACTACGAGCCGCCGGAGCTGAACCT
ggttaat putative branch site (score: 4)
aagagaaaatatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtttcttgaatttttcttattgttacttaacaaaaagaagagaaaatatttatgggttaatacgtatatttgtacggatcggtttagGTTGGACCATATATGTGGAAAACGTACAAGGAAGTATACGAAGAAGTTTTGCAGATTGGCTCTGCACTACGAGCCGCCGGAGCTGAACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA