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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcttttttttttcctttcgccatatacattttcttgactcaaactcaagaacgcgactcaaaattgtgtgtatatgatgttctttagGTTCAGGAGCAGTCGATTACATTGTAGAGCATGCGGAAATCGACTTTGTGTTTGTCCAAGACACCAAAATTAAAGGA

Basic information

species Arabidopsis thaliana
transcript AT2G47240.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116485829|gb|EG528421.1|EG528421
EST:     GCTTGTGCAGCTCACACTCTAATCTGTGTACCTCTATATGATACATTGG                         GTTCAGGAGCAGTCGATTACATTGTAGAGCATGCGGAAATCGACTTTGTGT
genomic: GCTTGTGCAGCTCACACTCTAATCTGTGTACCTCTATATGATACATTGGgtaagtcttt ... tgttctttagGTTCAGGAGCAGTCGATTACATTGTAGAGCATGCGGAAATCGACTTTGTGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgactcaaactcaagaacgcgactcaaaattgtgtgtatatgatgttctttagGTTCAGGAGCAGTCGATTACATTGTAGAGCATGCGGAAATCGACTTTGTGTTTGTCCAAGACACCAAAATTAAAGGA
 tcttgac  putative branch site (score: 3)
                                             tgttcttt  putative PPT
                         tcaaaatt  TA-rich tract