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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatctctaagactctaaatatatttataaatagttttcttgttagatgttgaatatataaaaagaaaaaaaaacaaattatagttagacatatatcaccttttgtgtataattattgcaattaataaacactcttttggggttttatttttagTAAATCAGTGGAGAAATTCCCTGACAATAATATGCTTGGATGGCGTCGAATTGTTGATGAGAAG

Basic information

species Arabidopsis thaliana
transcript AT2G47240.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116485829|gb|EG528421.1|EG528421
EST:     GGTTTTCCTCCGATTGATTCTGAGATCACCACTGCTTGGGACATTTTCAG                         TAAATCAGTGGAGAAATTCCCTGACAATAATATGCTTGGATGGCGTCGAAT
genomic: GGTTTTCCTCCGATTGATTCTGAGATCACCACTGCTTGGGACATTTTCAGgtatatctct ... ttatttttagTAAATCAGTGGAGAAATTCCCTGACAATAATATGCTTGGATGGCGTCGAAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttgtgtataattattgcaattaataaacactcttttggggttttatttttagTAAATCAGTGGAGAAATTCCCTGACAATAATATGCTTGGATGGCGTCGAATTGTTGATGAGAAG
                    aattaat  putative branch site (score: 3)
                                           ttttattttt  putative PPT
      tgtataattattgcaa  TA-rich tract