Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actagagtgtatgtgagaattaaatgaattaggtgcacacacaaagcgacgttgatattaccataaatatctttttgttgactatttgatcgttgaccagGGACGTGAGAAACCGGAAGACACGAACCCGCCTAAGGCGTTTAACATATGCACCATAATGTACACCAGCGGCACAAGCGGTGATCCTAAAGGTGTGGTTT

Basic information

species Arabidopsis thaliana
transcript AT2G47240.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86058769|gb|DR354526.1|DR354526
EST:     CTTCAGAAATTGGAGTCAAAACATACTCCTGGATCGATTTTCTCCATATG                         GGACGTGAGAAACCGGAAGACACGAACCCGCCTAAGGCGTTTAACATATGC
genomic: CTTCAGAAATTGGAGTCAAAACATACTCCTGGATCGATTTTCTCCATATGgttcgtctca ... cgttgaccagGGACGTGAGAAACCGGAAGACACGAACCCGCCTAAGGCGTTTAACATATGC
EST: gi|86058766|gb|DR354523.1|DR354523
EST:     CTTCAGAAATTGGAGTCAAAACATACTCCTGGATCGATTTTCTCCATATG                         GGACGTGAGAAACCGGAAGACACGAACCCGCCTAAGGCGTTTAACATATGC
genomic: CTTCAGAAATTGGAGTCAAAACATACTCCTGGATCGATTTTCTCCATATGgttcgtctca ... cgttgaccagGGACGTGAGAAACCGGAAGACACGAACCCGCCTAAGGCGTTTAACATATGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcgacgttgatattaccataaatatctttttgttgactatttgatcgttgaccagGGACGTGAGAAACCGGAAGACACGAACCCGCCTAAGGCGTTTAACATATGCACCATAATGTACACCAGCGGCACAAGCGGTGATCCTAAAGGTGTGGTTT
         atattaccataaatat  TA-rich tract