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CAAGCTTGCGTGGTTGAATCGTGGGTACTCTCATAGTAAAGCTTCACCCATGGCTGATTTCATTGCTTTCAGAAAGgttaatagcagttgatataatggttttttctttgtatttttggtgcttttgtttaggtttatggtcatcacataaacctgacttttagaggttttgtttttctgttaaag
species | Arabidopsis thaliana |
transcript | AT2G47240.1 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CTGATTTCATTGCTTTCAGAAAG ATTAGAGACAAATTGGGAGGTCGCATCCGGTTGTTAGTATCCGGAGGAGCAEST: gi|124836523|gb|EH920962.1|EH920962
genomic: CTGATTTCATTGCTTTCAGAAAGgttaatagca ... tctgttaaagATTAGAGACAAATTGGGAGGTCGCATCCGGTTGCTAGTATCTGGAGGAGCA
EST: ACTCTCATAGTAAAGCTTCACCCATGGCTGATTTCATTGCTTTCAGAAAG ATTAGAGACAAATTGGGAGGTCGCATCCGGTTGCTAGTAEST: gi|124909413|gb|EH983493.1|EH983493
genomic: ACTCTCATAGTAAAGCTTCACCCATGGCTGATTTCATTGCTTTCAGAAAGgttaatagca ... tctgttaaagATTAGAGACAAATTGGGAGGTCGCATCCGGTTGCTAGTA
EST: ACTCTCATAGT-AAGCTTCACCCATGGCTGATTTCATTGCTTTCAGAAAG ATTAGAGACAAATTGGGAGGTCGEST: gi|86058770|gb|DR354527.1|DR354527
genomic: ACTCTCATAGTAAAGCTTCACCCATGGCTGATTTCATTGCTTTCAGAAAGgttaatagca ... tctgttaaagATTAGAGACAAATTGGGAGGTCG
EST: ACTCTCATAGTAAAGCTTCACCCATGGCTGATTTCATTGCTTTCAGAAAG ATTAGAGACAAATTGGGAGGTCGCATCCGGTTGTTAGTATCCGAAGGAGCAEST: gi|124722011|gb|EH813413.1|EH813413
genomic: ACTCTCATAGTAAAGCTTCACCCATGGCTGATTTCATTGCTTTCAGAAAGgttaatagca ... tctgttaaagATTAGAGACAAATTGGGAGGTCGCATCCGGTTGCTAGTATCTGGAGGAGCA
EST: GCTGATTTCATTGCTTTCAGAAAG ATTTAGAGACAAATTGGGAGGTCGCATCCGGTTG
genomic: GCTGATTTCATTGCTTTCAGAAAGgttaatagca ... tctgttaaagA-TTAGAGACAAATTGGGAGGTCGCATCCGGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGCTTGCGTGGTTGAATCGTGGGTACTCTCATAGTAAAGCTTCACCCATGGCTGATTTCATTGCTTTCAGAAAGgttaatagcagttgatataatggttttttctttgtatttttggtgcttttgtttaggtttatggtcatcacataaacctgacttttagaggttttgtttttctgttaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT