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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCAGGAGCAGTCGATTACATTGTAGAGCATGCGGAAATCGACTTTGTGTTTGTCCAAGACACCAAAATTAAAGGAgttaagatcttttaaatttatttcactaattaattgttatcattaaactaattaaaacatttttcaaaagtattcatcaagtgaataataaactttttgttttcttttgttcatgctattgaaatttag

Basic information

species Arabidopsis thaliana
transcript AT2G47240.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164030665|gb|ES152254.1|ES152254
EST:     AGCATGCGGAAATCGACTTTGTGTTTGTCCAAGACACCAAAATTAAAGGA                         CTTCTTGAGCCAGATTGCAAATGTGCTAAACGGCTAAAAGC
genomic: AGCATGCGGAAATCGACTTTGTGTTTGTCCAAGACACCAAAATTAAAGGAgttaagatct ... tgaaatttagCTTCTTGAGCCAGATTGCAAATGTGCTAAACGGCTAAAAGC
EST: gi|116485829|gb|EG528421.1|EG528421
EST:     AGCATGCGGAAATCGACTTTGTGTTTGTCCAAGACACCAAAATTAAAGGA                         CTTCTTGAGCCAGATTGCAAATGTGCTAAACGGCTAAAAGCTATAGTTTCC
genomic: AGCATGCGGAAATCGACTTTGTGTTTGTCCAAGACACCAAAATTAAAGGAgttaagatct ... tgaaatttagCTTCTTGAGCCAGATTGCAAATGTGCTAAACGGCTAAAAGCTATAGTTTCC
EST: gi|125100019|gb|EL155621.1|EL155621
EST:     AGCATGCGGAAATCGACTTTGTGTTTGTCCAAGACACCAAAATTAAAGGA                         CTTCTTGAGCCAGATTGCAAATGTGCTAAACGGCTAAAAGCTATA
genomic: AGCATGCGGAAATCGACTTTGTGTTTGTCCAAGACACCAAAATTAAAGGAgttaagatct ... tgaaatttagCTTCTTGAGCCAGATTGCAAATGTGCTAAACGGCTAAAAGCTATA