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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAATCAGTGGAGAAATTCCCTGACAATAATATGCTTGGATGGCGTCGAATTGTTGATGAGAAGgtgagtttcttgaatttttcttattgttacttaacaaaaagaagagaaaatatttatgggttaatacgtatatttgtacggatcggtttag

Basic information

species Arabidopsis thaliana
transcript AT2G47240.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116485829|gb|EG528421.1|EG528421
EST:     AATTCCCTGACAATAATATGCTTGGATGGCGTCGAATTGTTGATGAGAAG                         GTTGGACCATATATGTGGAAAACGTACAAGGAAGTATACGAAGAAGTTTTG
genomic: AATTCCCTGACAATAATATGCTTGGATGGCGTCGAATTGTTGATGAGAAGgtgagtttct ... atcggtttagGTTGGACCATATATGTGGAAAACGTACAAGGAAGTATACGAAGAAGTTTTG
EST: gi|124788662|gb|EH878341.1|EH878341
EST:     AATTCCCTGACAATAATATGCTTGGATGGCGTCGAATTGTTGATGAGAAG                         GTTGGACCATATATGTGGAAAACGTACAAGGAAGTATACGAAGAAGTTTTG
genomic: AATTCCCTGACAATAATATGCTTGGATGGCGTCGAATTGTTGATGAGAAGgtgagtttct ... atcggtttagGTTGGACCATATATGTGGAAAACGTACAAGGAAGTATACGAAGAAGTTTTG
EST: gi|125165055|gb|EL191512.1|EL191512
EST:     GGATGGCGTCGAATTGTTGATGAGAAG                         GTTGGACCATATATGTGGAAAACGTACAAGGAAGTATACGAAGAAGTTTTG
genomic: GGATGGCGTCGAATTGTTGATGAGAAGgtgagtttct ... atcggtttagGTTGGACCATATATGTGGAAAACGTACAAGGAAGTATACGAAGAAGTTTTG