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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcttcttgcacatctgaatagtatgatgagttcttttgtaaatatcaaatatctgactttgttttgatattgaatcagTGACGTAAGAAACAACAGTTTGACTGGTAGTATACCTGAGACGATAGGAAATTGCACTGCCTTCCAGGTTTT

Basic information

species Arabidopsis thaliana
transcript AT2G26330.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G26330.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 8
-----------gtgagtct-tcttgcacatctgaatagtatgatgagttcttttgtaaatatcaaatatctgac------------tttgttttgatattgaat---cagTGACGTAAGAAACAACAGTTTGACTGGTAGTATACCTGAGACGATAGGAAATTGCACTGCCTTCCAGGTTTT
            |   | |  ||| | |  ||  |    ||  | |||| |||  |  ||   |||||  |||             | | ||||  | |   ||   |||||| ||||||||||||||||||||||| |  || ||  |||  || || || || |||||||||||||| ||
gtaagttttcgatacctttacctttccctcctagaacccatcctcagttttttcatttattgaaaatacttgagggcttttcccaatctatttttctctaccatttgcagTGATGTAAGAAACAACAGTTTGACTGGCACCATTCCACAGAATATTGGCAACTGTACTGCCTTCCAGGTCTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatgagttcttttgtaaatatcaaatatctgactttgttttgatattgaatcagTGACGTAAGAAACAACAGTTTGACTGGTAGTATACCTGAGACGATAGGAAATTGCACTGCCTTCCAGGTTTT
       ttcttttgtaaatatc  TA-rich tract