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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACTTGGCACAGAATAAACTCAGTGGTGAGATACCAAGACTTATTTACTGGAATGAAGTTCTTCAGTATCTgtaagtgtcaatgttttttgaagtctgtcaatgtctcttcattacccggtgataattgttgtactatgatgagcag

Basic information

species Arabidopsis thaliana
transcript AT2G26330.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G26330.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os06g10230.1 (Oryza sativa), 5'ss of exon 7
GGACTTGGCACAGAATAAACTCAGTGGTGAGATACCAAGACTTATTTACTGGAATGAAGTTCTTCAGTATCTgtaagt-gtcaatgtttt----ttgaagtctgtcaatgtctcttcattacccggtgataattgttgtactatgatg-agcag------------------
||||||||||||||| ||||| ||||| |||||||||||||| || || ||||| || |||||||| ||  |||||||  ||  | ||||    | ||||| ||   ||    |   | | |  |   || | | || || | |  |  ||                     
GGACTTGGCACAGAACAAACTGAGTGGAGAGATACCAAGACTGATATATTGGAACGAGGTTCTTCAATACTTgtaagtcatccttattttgcgctggaagtttgaagattgtgcagtagttctagtatatcagtattttattgtattttagttatgtacctacttgaatgcg

upper sequence: AT2G26330.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA06G05900.1 (Glycine max), 5'ss of exon 8
GGACTTGGCACAGAATAAACTCAGTGGTGAGATACCAAGACTTATTTACTGGAATGAAGTTCTTCAGTATCTgtaagtgtcaatgttttt---tgaagtctgtcaat---gtctcttcattacccggtgataattgttgtactatgatgagcag-------------------------------------------
 ||| ||||||||||||| || || || ||||||||||||||||| || |||||||||||| | || ||||||| ||  | | |  ||     |||| ||| ||| |    |  |||  ||| | |    |  ||   |  |||||||| |                                              
AGACCTGGCACAGAATAATCTTAGCGGGGAGATACCAAGACTTATATATTGGAATGAAGTTTTGCAATATCTgtgagcattactaattcgcaatgaaatctatcacttaattgacttggttatctgtgcttcttttaggctctatgatgtgttcttgctgtcaatctttgtttgtgtctttccttttcctatgctag

upper sequence: AT2G26330.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv04s0008g01970.t01 (Vitis vinifera), 5'ss of exon 7
GGACTTGGCACAGAATAAACTCAGTGGTGAGATACCAAGACTTATTTACTGGAATGAAGTTCTTCAGTATCTgtaagtgtcaatgttttttgaagtctgtcaatgtctcttcattacccggtgataattgttgtactatgatgagcag------------------------
|||  |||||||||||| | | ||||| || ||||| || ||||| ||||||||||||||| | |||||||||| ||| | |    | ||||| |      ||    | |||| |    | || |      ||||    |||    ||                        
GGATCTGGCACAGAATAGATTGAGTGGAGAAATACCCAGGCTTATATACTGGAATGAAGTTTTGCAGTATCTgtgagtat-acccatatttgatgatatcaaactctttttcactctatgatgttgtactctgtaaatcgatattgagctcgagaattatgtttcaatttag