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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtagctagttattctgctactagtcttcatatgtcattgctaaaaatatactcaccatgtggaatatggatttttactttgtccagGATTCTGAAGAATAACCAATTGATAGGACCGATCCCTTCAACACTTTCACAGATTCCAAACCTGAAAATTCT

Basic information

species Arabidopsis thaliana
transcript AT2G26330.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G26330.1 (Arabidopsis thaliana), 3'ss of exon 5
lower sequence: GLYMA17G34380.1 (Glycine max), 3'ss of exon 6
gtaagtagct--agttattctgctactagtcttcatatgtcattgctaaaaatatactcacca--tgtggaatatggatttttactttg--tccagGATTCTGAAGAATAACCAATTGATAGGACCGATCCCTTCAACACTTTCACAGATTCCAAACCTGAAAATTCT
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gtgagtatttttattggtgtttctcctcaattgaaaattgatttttggatgaggttatgaccagtttttctgtgtaaattgtaatttttatctcagGATTTTGAAGAACAACCAATTGATTGGACCAATTCCTTCAACTTTGTCTCAGATTCCTGATTTGAAGATTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164165246|gb|ES060399.1|ES060399
EST:     CAACTTGAGCAGCT                         GATTCTGAAGAATAACCAATTGATAGGACCGATCCCTTCAACACTTTCACA
genomic: CAACTTGAGCAGCTgtaagtagct ... ctttgtccagGATTCTGAAGAATAACCAATTGATAGGACCGATCCCTTCAACACTTTCACA
EST: gi|164116119|gb|ES061076.1|ES061076
EST:     AGTGGTGACATACCGTTTTCGATTTCGAAGTTGAAGCAACTTGAGCAGCT                         GATTCTGAAGAATAACCAATTGATAGGACCGATCCCTTC
genomic: AGTGGTGACATACCGTTTTCGATTTCGAAGTTGAAGCAACTTGAGCAGCTgtaagtagct ... ctttgtccagGATTCTGAAGAATAACCAATTGATAGGACCGATCCCTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcattgctaaaaatatactcaccatgtggaatatggatttttactttgtccagGATTCTGAAGAATAACCAATTGATAGGACCGATCCCTTCAACACTTTCACAGATTCCAAACCTGAAAATTCT
                 tactcac  putative branch site (score: 1)
                                       tttttactttgtcc  putative PPT
     ttgctaaaaatata  TA-rich tract