Sequence
atgc intronic sequence ATGC exonic sequenceGCTCACTGAGAAATCCGATGTCTACAGTTATGGAATAGTCCTTCTTGAGTTGTTAACCCGAAGGAAAGCCGTTGATGACGAATCCAATCTCCACCATCTGgtttgttctttcttgcctatctctctcagctgctctgtttaggtcaagtccgtaatcttgttttcattgattcacttacatcag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G26330.1 |
intron # | 26 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G26330.1 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: GLYMA17G34380.2 (Glycine max), 5'ss of exon 25
GCTCACTGAGAAATCCGATGTCTACAGTTATGGAATAGTCCTTCTTGAGTTGTTAACCCGAAGGAAAGCCGTTGATGACGAATCCAATCTCCACCATCTGgtttgttctttcttgcctatctctctcagctgctctgtttaggtcaagtccgta-atcttgttttcattgattcacttacatcag---------------
||||||||||| || ||||| |||||||| || || || | ||||||||| |||| |||||||||| ||||| | |||||||| |||||||||||||| |||| | || ||| | || || | | | ||||| || || | | ||
TCTCACTGAGAAGTCTGATGTGTACAGTTACGGTATTGTTTTACTTGAGTTGCTAACTGGAAGGAAAGCTGTTGACAATGAATCCAACCTCCACCATCTGgtgagttcacaacacatttcaatatacacgtgcgcgagcgagcacacacacatgcagacagttttttatgtttagccttggtcttttatgagctttaggt
upper sequence: AT2G26330.1 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: GLYMA14G11220.2 (Glycine max), 5'ss of exon 26
GCTCACTGAGAAATCCGATGTCTACAGTTATGGAATAGTCCTTCTTGAGTTGTTAACCCGAAGGAAAGCCGTTGATGACGAATCCAATCTCCACCATCTGgtttgttcttt-----cttgcctatctctctcagctgctctgtttaggtcaagtccgtaatcttg--ttttcattgattcacttacatcag---------
||||||||||| || ||||| ||||||||||| || || | || |||||| |||| |||||||||| ||||| | |||||||| ||||||||||| || ||| | ||| || | | | | | | || |||| ||| || | | | || ||
TCTCACTGAGAAGTCTGATGTGTACAGTTATGGTATTGTTTTACTCGAGTTGCTAACTGGAAGGAAAGCTGTTGACAATGAATCCAACCTCCACCATCTTgtaagtttactacaaatttgaatacaagcgtgcgtgtatacacacatgctgacggattagccttggtcttttatgaacttaggtatatatttattgctct
upper sequence: AT2G26330.1 (Arabidopsis thaliana), 5'ss of exon 26
lower sequence: Vv04s0008g01970.t01 (Vitis vinifera), 5'ss of exon 26
GCTCACTGAGAAATCCGATGTCTACAGTTATGGAATAGTCCTTCTTGAGTTGTTAACCCGAAGGAAAGCCGTTGATGACGAATCCAATCTCCACCATCTGgt---ttgttctttcttgcctatctctctcagctgc---tctgtttaggtcaagtccgta----atcttgttttcattgattcacttacatcag------
||||| || || || ||||||||||| |||||||| || || |||||| || | || |||||||||| || || | |||||||||||||| |||||||| | || | ||| | || | || | ||| || | || | | | | | || ||| | || | ||
TCTCACGGAAAAGTCTGATGTCTACAGCTATGGAATTGTTCTACTTGAGCTGCTGACTGGAAGGAAAGCAGTAGACAATGAATCCAATCTCCATCATCTGgtaaatcaatcgcttttggtttctacttgaaccttcgtgtctattgaattccatttagcatgagaaattttttatgctagacgacaaatgatagttaatcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|163983155|gb|ES012205.1|ES012205EST: TGTTAACCCGAAGGAAAGCCGTTGATGACGAATCCAATCTCCACCATCTG ATAATGTCAAAGACGGGGAACAATGAAGTGATGGAAA
genomic: TGTTAACCCGAAGGAAAGCCGTTGATGACGAATCCAATCTCCACCATCTGgtttgttctt ... cttacatcagATAATGTCAAAGACGGGGAACAATGAAGTGATGGAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTCACTGAGAAATCCGATGTCTACAGTTATGGAATAGTCCTTCTTGAGTTGTTAACCCGAAGGAAAGCCGTTGATGACGAATCCAATCTCCACCATCTGgtttgttctttcttgcctatctctctcagctgctctgtttaggtcaagtccgtaatcttgttttcattgattcacttacatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA