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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactgtttcaacattcactgtagcatgaaataaagtatcttactttaattctattccactctctgagttgtgacttttgtcttctgtttttttctaatgtagTGATCTGCGAGGTAATCGCTTGTCTGGACAAATCCCTGATGAGATTGGTGACTGTTCTTCTTTGCAAAACTT

Basic information

species Arabidopsis thaliana
transcript AT2G26330.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G26330.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GRMZM2G463904_T02 (Zea mays), 3'ss of exon 2
gtaactgtttcaacattcactgtagcatgaaataaagtatcttactttaattctattccactctctgagttgtgacttttgtcttctgtttttttctaatgtagTGATCTGCGAGGTAATCGCTTGTCTGGACAAATCCCTGATGAGATTGGTGACTGTTCTTCTTTGCAAAACTT-
|||  ||   |  ||||   |    |||||| ||    ||  |     || | |  |  ||  | |          |||       ||||  ||| |  | ||| ||| ||      ||| |  | |||||||| ||||| |||||||||||||| |||||||   | | |||||| 
gtag-tggcgctgcatt-gtttcctcatgaactatcagatgctg----aactgtgcttgacatttt---------ttttcacggcgtgttggtttgtg-tctagCGATTTGAAGTCGAATGGACTCTCTGGACAGATCCCCGATGAGATTGGTGATTGTTCTTTGCT-CGAAACTTT

upper sequence: AT2G26330.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: GLYMA14G11220.1 (Glycine max), 3'ss of exon 3
gtaactgtttcaacattcactgtagcatgaaataaagtatcttactttaattctattccactctctgagttgtgacttttgtcttctgtttttttctaatgtagTGATCTGCGAGGTAATCGCTTGTCTGGACAAATCCCTGATGAGATTGGTGACTGTTCTTCTTTGCAAAACTT
           ||   | ||| |  | | |   ||  | |  |||  | ||    ||      | ||  |||    | || | | |   ||  ||   ||  ||||| ||  |||  ||  | || || || || || || ||||||||||||||||||||||||||  | ||| |
---------gtaattattactctc-cttcagccaatttttgatacagtgatgtagttgtggcatttgcattgcttatcttttttgccacttgctt--gatacagTGACCTCAGAGAAAACAGGTTATCAGGGCAGATACCGGATGAGATTGGTGACTGTTCTTCTTTAAAGAACCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctattccactctctgagttgtgacttttgtcttctgtttttttctaatgtagTGATCTGCGAGGTAATCGCTTGTCTGGACAAATCCCTGATGAGATTGGTGACTGTTCTTCTTTGCAAAACTT
                                            ttctaat  putative branch site (score: 2)
                          cttttgtcttctgttt  CT-rich tract
                                       tttttttctaatgta  TA-rich tract