Sequence
atgc intronic sequence ATGC exonic sequencegtatgaccaaccttctcttcacttctctttttgcatacagtcactactaagttgtgtttccttatcaactatttgtaaaatattcatagGGAACTCAATGATAATCATCTCACGGGTCATATACCACCAGAGCTTGGGAAGCTTACTGACTTGTTTGATCT
Basic information
species | Arabidopsis thaliana |
transcript | AT2G26330.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G26330.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA06G05900.3 (Glycine max), 3'ss of exon 13
-------gtatgaccaaccttctcttcac---ttctctttttgcatacagtcactactaagttgtgtttccttatc-aactatttgtaaaatattcatagGGAACTCAATGATAATCATCTCACGGGTCATATACCACCAGAGCTTGGGAAGCTTACTGACTTGTTTGATCT
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caatatttttaagccaacatttgttttgaacaatgaccacttaccaagaggtgcaacttggtttaaatttgtcatctaatgcttcacacttcaattacagGGAATTGAATGACAACCATTTAAGTGGACATATCCCACCTGAGCTTGGAAAGCTTACTGATTTGTTTGACTT
upper sequence: AT2G26330.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: GLYMA04G05910.1 (Glycine max), 3'ss of exon 6
-------gtatgaccaaccttctcttcacttctcttt---ttgcatacagtcactactaagttgtgtttccttatc-aactatttgtaaaatattcatagGGAACTCAATGATAATCATCTCACGGGTCATATACCACCAGAGCTTGGGAAGCTTACTGACTTGTTTGATCT
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acaattttttaagctgacatttgttttgaacaaatataacttacgaagaggtgcaacttggtttaaatttgtcatctaatgcttcacacttcaattgcagGGAATTGAATGACAACCATTTAAGTGGACATATCCCACCTGAGCTTGGAAAGCTTACTGATTTGTTTGACTT
upper sequence: AT2G26330.1 (Arabidopsis thaliana), 3'ss of exon 13
lower sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 13
--------------------------------------------------------------------------------------------------gtatgaccaaccttctcttcactt-------ctctttttgcatac----agtcactactaagttgtgtttccttatca-actatttg-taaaatattcatagGGAACTCAATGATAATCATCTCACGGGTCATATACCACCAGAGCTTGGGAAGCTTACTGACTTGTTTGATCT
|| |||| ||||| ||| || ||| ||| | || || | | || | | || || | | ||| | | || |||||| | ||||||||||||||||| || ||| ||| |||| ||||||||||| || ||||||||||| ||
gtatgaatgctttccctatccctgtcattcattgaacagtttctttcttcacctttctgcatgttaaatatttgacgagtgcattggaggcacttggaataataccagacttctgttccattaatgaggttctgtttatcttttattagccatgaatcaggggaaggtactcattgtagtgtttaattccacctttgcagGGAATTGAATGATAATCATCTCACAGGGTCTATTCCATCAGAACTTGGGAAGCTGACCGACTTGTTTGACCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atacagtcactactaagttgtgtttccttatcaactatttgtaaaatattcatagGGAACTCAATGATAATCATCTCACGGGTCATATACCACCAGAGCTTGGGAAGCTTACTGACTTGTTTGATCT
ttatcaactatttgta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgaccaaccttctcttcacttctctttttgcatacagtcactactaagttgtgtttccttatcaactatttgtaaaatattcatagGGAACTCAATGATAATCATCTCACGGGTCATATACCACCAGAGCTTGGGAAGCTTACTGACTTGTTTGATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT