Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAATCTTGTGAGCCTACAAGCTTATTCCCTCTCTCACTTGGGGAGTCTTCTGTTCTATGACTATTTGGAAAATGGTAGCCTCTGGGATCTTCTTCATGgtaagtctcatcgccaaacatagaaaattatttgaatcttctgtgacataacaacttgcttgtgtgttttgtaaag

Basic information

species Arabidopsis thaliana
transcript AT2G26330.1
intron # 25
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G26330.1 (Arabidopsis thaliana), 5'ss of exon 25
lower sequence: LOC_Os02g53720.1 (Oryza sativa), 5'ss of exon 4
AGAAATCTTGTGAGCCTACAAGCTTATTCCCTCTCTCACTTGGGGAGTCTTCTGTTCTATGACTATTTGGAAAATGGTAGCCTCTGGGATCTTCTTCATGgtaagt------ctcatcgccaa-----acatagaaa--attatttgaatcttctgtgacataacaacttgcttgtgtgttttgtaaag-----------
 | |||||||| ||||| ||||  |||||||| || |     |||| |||||| ||||| ||||| ||||||||||| || ||||||||| || | ||||||||||        ||| || ||     |||||| ||   | |   ||||  |  ||      |    ||| |  | || |||||| ||           
CGGAATCTTGTCAGCCTTCAAGGGTATTCCCTATCACCTGCTGGGAATCTTCTCTTCTACGACTACTTGGAAAATGGCAGTCTCTGGGATGTTTTACATGgtaagtgaattttacatggcaaacaaatacataggaactgtaagcagaatagttggtatttagaacgattgttcttctggtttgtatagccgttgcctgt

upper sequence: AT2G26330.1 (Arabidopsis thaliana), 5'ss of exon 25
lower sequence: GLYMA14G11220.2 (Glycine max), 5'ss of exon 25
AGAAATCTTGTGAGCCTACAAGCTTATTCCCTCTCTCACTTGGGGAGTCTTCTGTTCTATGACTATTTGGAAAATGGTAGCCTCTGGGATCTTCTTCATGgtaagtct-----------catcgccaaacatagaaa-attatttgaatcttctgtgacataacaacttgctt--gtgtgttttgtaaag----------
 | ||| | || || || ||||  || ||| | || |  |  ||   ||| ||||| ||||||||  |||||||||| || || |||||||||||||||||||||| |             |   ||    |  | | ||   | ||| | | | |     |   |  ||  |   | |  | | | ||           
CGGAATTTGGTCAGTCTCCAAGGCTACTCCTTGTCCCCATATGGCCATCTCCTGTTTTATGACTACATGGAAAATGGCAGTCTATGGGATCTTCTTCATGgtaagtttacgctatttttttttttcacttttgcagacatgcatggaaccctttatttagaaggtatctgtctcaatctcctcttttaaatagctgatta

upper sequence: AT2G26330.1 (Arabidopsis thaliana), 5'ss of exon 25
lower sequence: GLYMA17G34380.2 (Glycine max), 5'ss of exon 24
AGAAATCTTGTGAGCCTACAAGCTTATTCCCTCTCTCACTTGGGGAGTCTTCTGTTCTATGACTATTTGGAAAATGGTAGCCTCTGGGATCTTCTTCATGgtaagtctca-tcgccaaacatagaaaattatttgaatcttctgtgacataacaac-ttgcttgtgtgttttgtaaag----------------------
 | ||||| || || || |||| ||||||| | || |  |  |||  ||| ||||| ||||||||  |||||||||| || || ||||||||||||||||||| ||   |  |            | | | ||  |  | |   |  |||   | | ||  || ||   || | |                         
CGGAATCTGGTCAGTCTCCAAGGTTATTCCTTGTCCCCATATGGGCATCTCCTGTTTTATGACTACATGGAAAATGGCAGTCTATGGGATCTTCTTCATGgtatgttcaagccatttttttccttatacttttgtaggcatgcattgcatggaaccctttattttgaacttagaagtatctgtcacaatctcctcttcca

upper sequence: AT2G26330.1 (Arabidopsis thaliana), 5'ss of exon 25
lower sequence: GLYMA06G05900.1 (Glycine max), 5'ss of exon 26
AGAAATCTTGTGAGCCTACAAGCTTATTCCCTCTCTCACTTGGGGAGTCTTCTGTTCTATGACTATTTGGAAAATGGTAGCCTCTGGGATCTTCTTCATGgtaagtctcatcgccaaacatagaaaattatttgaatcttctgtgacataacaacttgcttgtgtgttttgtaaag------------------------------
|||||||| || || || ||||  || ||  | ||    |  || | |||||| || ||||||||  |||||||||| || || ||||||||||| ||||||||||   |  |||     | ||||  |  |    |  | |||    | | |||||   |||    | |   | |                              
AGAAATCTGGTCAGTCTCCAAGGCTACTCTTTGTCAACGTACGGAAATCTTCTCTTTTATGACTACATGGAAAATGGCAGTCTATGGGATCTTCTGCATGgtaagttcaa--gccttggcttgaaagatgctgatgtactttgt----tgaaaacttttctgtacaatctactatgtacattcaaccttgcattgatttagcaata

upper sequence: AT2G26330.1 (Arabidopsis thaliana), 5'ss of exon 25
lower sequence: Vv04s0008g01970.t01 (Vitis vinifera), 5'ss of exon 25
AGAAATCTTGTGAGCCTACAAGCTTATTCCCTCTCTCACTTGGGGAGTCTTCTGTTCTATGACTATTTGGAAAATGGTAGCCTCTGGGATCTTCTTCATGgtaagtctca---tcgccaaaca-tagaaaattatttgaatcttctgtgacataacaact--tgcttgtgtgttttgtaaag------------------
|| ||||| ||  | |||||||  |||||||| || |  |  ||||  || || |||||||||||  |||||||||| || ||||||||||| ||||||||||||| | |   |  |  |||| ||      | |   | |||  | ||| | || |  |    |||   ||  |  ||||                   
AGGAATCTGGTCTGTCTACAAGGATATTCCCTGTCCCCTTCTGGGAACCTACTCTTCTATGACTACATGGAAAATGGCAGTCTCTGGGATCTACTTCATGgtaagtttaaactttcctgaacaatatggtgctctgcaagtctgatctgaaaaaatatttatcacttaaatgggtgctaaatgtgtgtcaagaagtgtga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125123167|gb|EL169616.1|EL169616
EST:     TCTGTTCTATGACTATTTGGAAAATGGTAGCCTCTGGGATCTTCTTCATG                         GCCCTACGAAGAAAAAGACTCTTGATTGGGACACACGG
genomic: TCTGTTCTATGACTATTTGGAAAATGGTAGCCTCTGGGATCTTCTTCATGgtaagtctca ... ttttgtaaagGCCCTACGAAGAAAAAGACTCTTGATTGGGACACACGG