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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGGCTTACTCTAATTATCTGAGCCATGCCAAAAAGGTTGTGCCTTGTGGCGAATTAACTGCTTCCCCATCTCTCCTCCGTCAAATCGCCAAGCGTCAGgtaagagattaaaaaaaaaaaaaacattggtcccaaatttcagaccaaaaacaaaatacatagccgttttgctctttgggaccaaagccttattgtttttgtgatatgtgaacag

Basic information

species Arabidopsis thaliana
transcript AT1G70710.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164064673|gb|ES095799.1|ES095799
EST:     CCCCATCTCTCCTCCGTCAAATCGCCAAGCGTCAG                         GTGGATTACATTCTCGGAGACAACCCGATGGGACTGTCTTACATGGTTGGA
genomic: CCCCATCTCTCCTCCGTCAAATCGCCAAGCGTCAGgtaagagatt ... atgtgaacagGTGGATTACATTCTCGGAGACAACCCGATGGGACTGTCTTACATGGTTGGA
EST: gi|164154063|gb|EL993865.1|EL993865
EST:     CTGCTTCCCCATCTCTCCTCCGTCAAATCGCCAAGCGTCAG                         GTGGATTACATTCTCGGAGACAACCCGATGGGACTGTCTTACATGGTTGGA
genomic: CTGCTTCCCCATCTCTCCTCCGTCAAATCGCCAAGCGTCAGgtaagagatt ... atgtgaacagGTGGATTACATTCTCGGAGACAACCCGATGGGACTGTCTTACATGGTTGGA
EST: gi|163987495|gb|ES061909.1|ES061909
EST:     GAATTAACTGCTTCCCCATCTCTCCTCCGTCAAATCGCCAAGCGTCAG                         GTGGATTACATTCTCGGAGACAACCCGATGGGAACTGTCTTACATGGTTGG
genomic: GAATTAACTGCTTCCCCATCTCTCCTCCGTCAAATCGCCAAGCGTCAGgtaagagatt ... atgtgaacagGTGGATTACATTCTCGGAGACAACCCGATGGGA-CTGTCTTACATGGTTGG
EST: gi|164153404|gb|ES117061.1|ES117061
EST:     CGAATTAACTGCTTCCCCATCTCTCCTCCGTCAAATCGCCAAGCGTCAG                         GTGGATTACATTCTCGGAGACAACCCGATGGGAACTGTCTTACATGGTTGG
genomic: CGAATTAACTGCTTCCCCATCTCTCCTCCGTCAAATCGCCAAGCGTCAGgtaagagatt ... atgtgaacagGTGGATTACATTCTCGGAGACAACCCGATGGGA-CTGTCTTACATGGTTGG
EST: gi|164090008|gb|ES054334.1|ES054334
EST:     GCGAATTAACTGCTTCCCCATCTCTCCTCCGTCAAATCGCCAAGCGTCAG                         GTGGATTACATTCTCGGAGACAACCCGATGGGAC
genomic: GCGAATTAACTGCTTCCCCATCTCTCCTCCGTCAAATCGCCAAGCGTCAGgtaagagatt ... atgtgaacagGTGGATTACATTCTCGGAGACAACCCGATGGGAC
EST: gi|164226697|gb|EL983487.1|EL983487
EST:     TCCCCATCTCTCCTCCGTCAAATCGCCAAGCGTCAG                         GTGGATTACATTCTCGGAGACAACCCGATGGGACTGTCTTACATGGTTGGA
genomic: TCCCCATCTCTCCTCCGTCAAATCGCCAAGCGTCAGgtaagagatt ... atgtgaacagGTGGATTACATTCTCGGAGACAACCCGATGGGACTGTCTTACATGGTTGGA
EST: gi|163984174|gb|ES074696.1|ES074696
EST:     GCGAATTAACTGCTTCCCCATCTCTCCTCCGTCAAATCGCCAAGCGTCAG                         GTGGATTACATTCTCGGAGACAACCCGATGGGACTGTC
genomic: GCGAATTAACTGCTTCCCCATCTCTCCTCCGTCAAATCGCCAAGCGTCAGgtaagagatt ... atgtgaacagGTGGATTACATTCTCGGAGACAACCCGATGGGACTGTC
EST: gi|164075871|gb|EL991535.1|EL991535
EST:     CAAATCGCCAAGCGTCAG                         GTGGATTACATTCTCGGAGACAACCCGATGGGACTGTCTTACATGGTTGGA
genomic: CAAATCGCCAAGCGTCAGgtaagagatt ... atgtgaacagGTGGATTACATTCTCGGAGACAACCCGATGGGACTGTCTTACATGGTTGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTGGCTTACTCTAATTATCTGAGCCATGCCAAAAAGGTTGTGCCTTGTGGCGAATTAACTGCTTCCCCATCTCTCCTCCGTCAAATCGCCAAGCGTCAGgtaagagattaaaaaaaaaaaaaacattggtcccaaatttcagaccaaaaacaaaatacatagccgttttgctctttgggaccaaagccttattgtttttgtgatatgtgaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC