1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcttacgtatatgtactattgaataaatatttttactgacgtagagaagatatatcaaattcacggatctgaaataaaaatgttgtaccgttgatcgcagGTATTCGCGTTTGCTAACAGATATCGCGGCGCGTATAGTAACAGTCTCTACCACGCGGTTTGTCCTTTTTACTGTGATTTCAACGGTTACCAG
species | Arabidopsis thaliana |
transcript | AT1G70710.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAAAACGCGATCCTGCTTATTCCAGACTTCTACTTGACCGTGCCACTAGG GTATTCGCGTTTGCTAACAGATATCGCGGCGCGTATAGTAACAGTCTCTACEST: gi|125265699|gb|EL279784.1|EL279784
genomic: GAAAACGCGATCCTGCTTATTCCAGACTTCTACTTGACCGTGCCACTAGGgtacgttact ... ttgatcgcagGTATTCGCGTTTGCTAACAGATATCGCGGCGCGTATAGTAACAGTCTCTAC
EST: GAAAACGCGATCCTGCTTATTCCAGACTTCTACTTAACCGTGCCACTAGG GTATTCGCGTTTEST: gi|86069495|gb|DR365252.1|DR365252
genomic: GAAAACGCGATCCTGCTTATTCCAGACTTCTACTTGACCGTGCCACTAGGgtacgttact ... ttgatcgcagGTATTCGCGTTT
EST: NNAAACGCGATCCTGCTTATTCCAGACTTCTACTTGACCGGGCCACTAGG GGTATTCGCGTTGGCTAACAGATATCGCGGCGCGTATAGTAEST: gi|163993310|gb|ES173853.1|ES173853
genomic: GAAAACGCGATCCTGCTTATTCCAGACTTCTACTTGACCGTGCCACTAGGgtacgttact ... ttgatcgcagG-TATTCGCGTTTGCTAACAGATATCGCGGCGCGTATAGTA
EST: AAAACGCGATCCTGCTTATTCCAGACTTCTACTTGACCGTGCCACTAGG GTATTCGCGTTTGCTAACAGATATCGCGGCGCGTATAGTAACAGTCTCTACEST: gi|86069497|gb|DR365254.1|DR365254
genomic: AAAACGCGATCCTGCTTATTCCAGACTTCTACTTGACCGTGCCACTAGGgtacgttact ... ttgatcgcagGTATTCGCGTTTGCTAACAGATATCGCGGCGCGTATAGTAACAGTCTCTAC
EST: GAAAACGCGATCCTGCTTATTCCAGACTTCTACTTGACCGTGCCACTAGG GTATTCGCGTTTGCEST: gi|164095125|gb|EL986493.1|EL986493
genomic: GAAAACGCGATCCTGCTTATTCCAGACTTCTACTTGACCGTGCCACTAGGgtacgttact ... ttgatcgcagGTATTCGCGTTTGC
EST: GCTTATTCCAGACTTCTACTTGACCGTGCCACTAGG GTATTCGCGTTTGCTAACAGATATCGCGGCGCGTATAGTAACAGTCTCTAC
genomic: GCTTATTCCAGACTTCTACTTGACCGTGCCACTAGGgtacgttact ... ttgatcgcagGTATTCGCGTTTGCTAACAGATATCGCGGCGCGTATAGTAACAGTCTCTAC
gaagatatatcaaattcacggatctgaaataaaaatgttgtaccgttgatcgcagGTATTCGCGTTTGCTAACAGATATCGCGGCGCGTATAGTAACAGTCTCTACCACGCGGTTTGTCCTTTTTACTGTGATTTCAACGGTTACCAG
cgttgat putative branch site (score: 5)
aaataaaaatgttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttacgtatatgtactattgaataaatatttttactgacgtagagaagatatatcaaattcacggatctgaaataaaaatgttgtaccgttgatcgcagGTATTCGCGTTTGCTAACAGATATCGCGGCGCGTATAGTAACAGTCTCTACCACGCGGTTTGTCCTTTTTACTGTGATTTCAACGGTTACCAG
- - - - - - - - - - gaataaa
- - - - - - - - - - - - - - - - - - - - - - -gaagata
- - - - - - - - - - - - - - - - - - - - - - - - - - - -caaattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaa