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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTCGCGTTTGCTAACAGATATCGCGGCGCGTATAGTAACAGTCTCTACCACGCGGTTTGTCCTTTTTACTGTGATTTCAACGGTTACCAGgtaaagtattatagttactctttattacctatttttagtatcagccgttggatggtaaatgttgattttgactgacatgatctgatggtggtgttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G70710.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164115232|gb|ES061741.1|ES061741
EST:     TACTGTGATTTCAACGGTTACCAG                         GATGAGTTACTGTGGGGAGCGGCATGGCTACACAAAGCCTCGAGGAAACGA
genomic: TACTGTGATTTCAACGGTTACCAGgtaaagtatt ... ggtgttgcagGATGAGTTACTGTGGGGAGCGGCATGGCTACACAAAGCCTCGAGGAAACGA
EST: gi|86069494|gb|DR365251.1|DR365251
EST:     GTCTCTACCACGCGGTTTGTCCTTTTTACTGTGATTTCAACGGTTACCAG                         GATGAGTTACTGTGGGGAGCGGCATGGCTACACAAAGCCTCGAGGAAACGA
genomic: GTCTCTACCACGCGGTTTGTCCTTTTTACTGTGATTTCAACGGTTACCAGgtaaagtatt ... ggtgttgcagGATGAGTTACTGTGGGGAGCGGCATGGCTACACAAAGCCTCGAGGAAACGA
EST: gi|164081013|gb|ES124606.1|ES124606
EST:     GTCTCTACCACGCGGTTTGTCCTTTTTACTGTGATTTCAACGGTTACCAG                         GATGAGTTACTGTGGGGAGCGGCATGGCTACACAAAGCCTCGAGGAAACGA
genomic: GTCTCTACCACGCGGTTTGTCCTTTTTACTGTGATTTCAACGGTTACCAGgtaaagtatt ... ggtgttgcagGATGAGTTACTGTGGGGAGCGGCATGGCTACACAAAGCCTCGAGGAAACGA
EST: gi|164011966|gb|ES169539.1|ES169539
EST:     CCTTTTTACTGTGATTTCAACGGTTACCAG                         TATGAGTTACTGTGGGGAGCGGCATGGCTACACAAAGCCTCGAGGAAACGA
genomic: CCTTTTTACTGTGATTTCAACGGTTACCAGgtaaagtatt ... ggtgttgcagGATGAGTTACTGTGGGGAGCGGCATGGCTACACAAAGCCTCGAGGAAACGA
EST: gi|164011076|gb|ES196355.1|ES196355
EST:     GTCTCTACCACGCGGTTTGTCCTTTTTACTGTGATTTCAACGGTTACCAG                         GATGAGTTACTGTGGGGAGCGGC
genomic: GTCTCTACCACGCGGTTTGTCCTTTTTACTGTGATTTCAACGGTTACCAGgtaaagtatt ... ggtgttgcagGATGAGTTACTGTGGGGAGCGGC
EST: gi|164156778|gb|ES074970.1|ES074970
EST:     GTCTCTACCACGCGGTTTGTCC-TTTTACTGTGATTTCAACGGTTACCAG                         GATGAGTTACTGTGGGGAGCG
genomic: GTCTCTACCACGCGGTTTGTCCTTTTTACTGTGATTTCAACGGTTACCAGgtaaagtatt ... ggtgttgcagGATGAGTTACTGTGGGGAGCG
EST: gi|164173139|gb|ES163400.1|ES163400
EST:     GTCCTTTTTACTGTGATTTCAACGGTTACCAG                         GATGAGTTACTGTGGGGAGCGGCATGGCTACACAAAGCCTCGAGGAAACGA
genomic: GTCCTTTTTACTGTGATTTCAACGGTTACCAGgtaaagtatt ... ggtgttgcagGATGAGTTACTGTGGGGAGCGGCATGGCTACACAAAGCCTCGAGGAAACGA
EST: gi|164011343|gb|ES211854.1|ES211854
EST:     GTCTCTACCACGCGGTTTGTCCTTTTTACTGTGATTTCAACGGTTACCAG                         GATGAGTTACTGTGGGGAGCGGCATGGCTACACAAAAGCCTCGAGGAAAC
genomic: GTCTCTACCACGCGGTTTGTCCTTTTTACTGTGATTTCAACGGTTACCAGgtaaagtatt ... ggtgttgcagGATGAGTTACTGTGGGGAGCGGCATGGCTACACAAA-GCCTCGAGGAAAC
EST: gi|164008341|gb|ES139563.1|ES139563
EST:     TGTGATTTCAACGGTTACCAG                         GATGAGTTACTGTGGGGAGCGGCATGGCTACACAAAGCCTCGAGGAAACGA
genomic: TGTGATTTCAACGGTTACCAGgtaaagtatt ... ggtgttgcagGATGAGTTACTGTGGGGAGCGGCATGGCTACACAAAGCCTCGAGGAAACGA
EST: gi|164079109|gb|EL982969.1|EL982969
EST:     GATTTCAACGGTTACCAG                         GATGAGTTACTGTGGGGAGCGGCATGGCTACACAAAGCCTCGAGGAAACGA
genomic: GATTTCAACGGTTACCAGgtaaagtatt ... ggtgttgcagGATGAGTTACTGTGGGGAGCGGCATGGCTACACAAAGCCTCGAGGAAACGA
EST: gi|164152299|gb|EL999688.1|EL999688
EST:     GTCTCTACCACGCGGTTTG-CCTTTTTACNGTGATTTCAACGGTTACCAG                         GATGAGTTACTGTGGGGAGCGGCATGGCTACACAAAGCCT
genomic: GTCTCTACCACGCGGTTTGTCCTTTTTACTGTGATTTCAACGGTTACCAGgtaaagtatt ... ggtgttgcagGATGAGTTACTGTGGGGAGCGGCATGGCTACACAAAGCCT
EST: gi|164107807|gb|EL994702.1|EL994702
EST:     CCACGCGGTTTGTCCTTTTTACTGTGATTTCAACGGTTACCAG                         GATGAGTTACTGTGGGGAGCGGCATGGCTACACAAAGCCTCGAGGAAACGA
genomic: CCACGCGGTTTGTCCTTTTTACTGTGATTTCAACGGTTACCAGgtaaagtatt ... ggtgttgcagGATGAGTTACTGTGGGGAGCGGCATGGCTACACAAAGCCTCGAGGAAACGA